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2
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Answer: A: Is there a way to run samtools sort, index, and view on multiple files at once?
8.6 years ago by Zev.Kronenberg 12k
7
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4
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Samtools Dedup Documentation
samtools
updated 8.7 years ago by 20 • written 12.3 years ago by 12k
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Answer: A: Adding allele frequency to the genotype field of a VCF file
8.7 years ago by Zev.Kronenberg 12k
4
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2
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2.1k
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Answer: A: Running 1.5M potentially different generalized linear models depending on distri
8.7 years ago by Zev.Kronenberg 12k
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3.2k
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Comment: C: Is 1000 genomes data good enough to use for PCA?
8.7 years ago by Zev.Kronenberg 12k
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1.9k
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Comment: C: Methods to correct for population stratification
8.7 years ago by Zev.Kronenberg 12k
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1
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6.5k
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Comment: C: How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
8.8 years ago by Zev.Kronenberg 12k
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2
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6.5k
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Answer: A: How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
8.8 years ago by Zev.Kronenberg 12k
1
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1
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3.1k
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Answer: A: Haplotype phasing for non-human model organism
8.8 years ago by Zev.Kronenberg 12k
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3.5k
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Comment: C: 1000Genome SV integrated map's power for SV filter
8.8 years ago by Zev.Kronenberg 12k
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4.2k
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Answer: A: Allele Frequency Calculator
8.8 years ago by Zev.Kronenberg 12k
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1
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7.2k
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Comment: C: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
8.8 years ago by Zev.Kronenberg 12k
1
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2.3k
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Answer: A: Estimating PSMC -p parameter and missing heterozygotes
8.9 years ago by Zev.Kronenberg 12k
2
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1
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13k
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Comment: C: A Wet-Lab Guide to 'what I wish I had known' for Computational Biology
8.9 years ago by Zev.Kronenberg 12k
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1
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7.7k
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Answer: A: How to align 100 samples with BWA?
8.9 years ago by Zev.Kronenberg 12k
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3.4k
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Comment: C: speed of bam-read count is too slow
8.9 years ago by Zev.Kronenberg 12k
2
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1.9k
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Answer: A: Is it good practice to convert lowest quality genotyes to missing?
8.9 years ago by Zev.Kronenberg 12k
0
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5.3k
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Comment: C: Output per variant and per sample heterozygosity fraction from VCF.
8.9 years ago by Zev.Kronenberg 12k
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3.1k
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Answer: A: Fix FoxG1 deletion in my son using CRISPR
8.9 years ago by Zev.Kronenberg 12k
1
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1
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3.1k
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Comment: C: Fix FoxG1 deletion in my son using CRISPR
8.9 years ago by Zev.Kronenberg 12k
0
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3.4k
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Comment: C: interpretion of TAjima's D test
8.9 years ago by Zev.Kronenberg 12k
3
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1
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5.3k
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Answer: A: Output per variant and per sample heterozygosity fraction from VCF.
8.9 years ago by Zev.Kronenberg 12k
2
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1
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4.4k
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Answer: C: about merging VCF files
8.9 years ago by Zev.Kronenberg 12k
1
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4.4k
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Comment: C: about merging VCF files
8.9 years ago by Zev.Kronenberg 12k
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0
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3.8k
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Comment: C: Parsing sam file
8.9 years ago by Zev.Kronenberg 12k
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1
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2.1k
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Answer: A: inversion detection in sequencing
8.9 years ago by Zev.Kronenberg 12k
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5.0k
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Comment: C: Big Browser : a new genom browser in development
8.9 years ago by Zev.Kronenberg 12k
2
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7.4k
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Comment: C: Annotation of Structural Variants and CNVs
8.9 years ago by Zev.Kronenberg 12k
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2
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20k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
9.0 years ago by Zev.Kronenberg 12k
0
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2
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20k
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Comment: Comment: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
updated 2.6 years ago by 44k • written 9.0 years ago by 12k
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1
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20k
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Comment: Comment: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
updated 2.6 years ago by 44k • written 9.0 years ago by 12k
0
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1
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2.9k
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Comment: Comment: Haplotype matrix to genotype matrix
updated 2.6 years ago by 44k • written 9.0 years ago by 12k
2
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1
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2.4k
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A command line option for region in GenotypeGVCFs?
GATK haplotypecaller
updated 2.6 years ago by 44k • written 9.0 years ago by 12k
0
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1
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2.4k
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Comment: C: Perplexing ADMIXTURE results - one component present at K =10 disappears at 11,
9.1 years ago by Zev.Kronenberg 12k
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1
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8.5k
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Comment: C: Beagle 4.1 error : Possible data conversion issue
9.2 years ago by Zev.Kronenberg 12k
0
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0
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16k
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Comment: C: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
9.3 years ago by Zev.Kronenberg 12k
0
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1
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5.2k
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Comment: C: VCFtools LD for haploids is nan
9.3 years ago by Zev.Kronenberg 12k
2
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1
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6.4k
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Comment: Comment: Thrown Into A Bioinformatics Position
updated 3.9 years ago by 44k • written 9.4 years ago by 12k
0
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1
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1.7k
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Comment: Comment: Is it worth realigning 1000 Genomes?
updated 2.4 years ago by 44k • written 9.4 years ago by 12k
0
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1
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2.7k
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Answer: A: vcf files generated from intersection/union of multiple callers
9.4 years ago by Zev.Kronenberg 12k
0
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1
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1.8k
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Comment: Comment: EVS non-reference variants for African-American
updated 2.4 years ago by 44k • written 9.4 years ago by 12k
0
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0
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25k
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Comment: C: How To Construct Phylogenetic Tree Using Snps
9.4 years ago by Zev.Kronenberg 12k
2
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0
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2.9k
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Comment: Comment: Change output name for ADMIXTURE analysis
updated 2.4 years ago by 44k • written 9.4 years ago by 12k
1
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1
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2.1k
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Comment: Comment: is Hapmap or 1000 genome VCF data is from diseased or healthy one
updated 2.4 years ago by 44k • written 9.4 years ago by 12k
0
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0
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7.3k
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Comment: Comment: Which Genome Synteny Program?
updated 2.4 years ago by 44k • written 9.4 years ago by 12k
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0
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4.6k
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Comment: C: Running MAKER2 pipeline with Augustus for the first time -- need some guidance
9.5 years ago by Zev.Kronenberg 12k
1
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0
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3.0k
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Comment: Comment: Estimate gene flow between two populations?
updated 2.4 years ago by 44k • written 9.5 years ago by 12k
0
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1
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2.8k
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Comment: Comment: ceph/ utah pedigree 1463 members no difference in genomic data
updated 2.4 years ago by 44k • written 9.5 years ago by 12k
10
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8
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13k
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bedtools 2.0 merge - "unable to open file or unable to determine types"
bedtools
updated 3.1 years ago by 44k • written 10.4 years ago by 12k
3
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0
replies
8.3k
views
Answer: Answer: large insertion/deletion detection from NGS data
updated 2.3 years ago by 44k • written 9.5 years ago by 12k
926 results • Page 3 of 19
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