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Visium spatial transcriptomics slide with two tissue samples
Spatial-Transcriptomics Visum
updated 10 months ago by 45k • written 10 months ago by ★ 2.4k
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407
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find_marker_genes throws error using case_groups and control_groups
stereopy python find_marker_genes
20 months ago by Chirag Nepal ★ 2.4k
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1.1k
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Comment: Comment: Two spatial transcriptomics datasets from same patient
23 months ago by Chirag Nepal ★ 2.4k
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2
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1.6k
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Answer: Answer: Chipseq visualization how to draw the figure
3.8 years ago by Chirag Nepal ★ 2.4k
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57k
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Comment: Comment: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
3.9 years ago by Chirag Nepal ★ 2.4k
5
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4
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3.2k
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Predict if the mutation is activating or deactivating
SNV INDEL Activating Deactivating mutations
updated 4.4 years ago by 20 • written 8.8 years ago by ★ 2.4k
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Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
4.6 years ago by Chirag Nepal ★ 2.4k
4
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2
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1.5k
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Mapping variable read length
alignment
updated 4.7 years ago by 20 • written 7.3 years ago by ★ 2.4k
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52k
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Comment: C: Bam File: Change Chromosome Notation
updated 4.9 years ago by 45k • written 9.8 years ago by ★ 2.4k
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1
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1.4k
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Comment: C: Find HBV integration sites in human genome.
5.2 years ago by Chirag Nepal ★ 2.4k
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3
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1.4k
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Find HBV integration sites in human genome.
ChimericReads HumanVirusGenome CAGE-seq
updated 5.2 years ago by 166k • written 5.2 years ago by ★ 2.4k
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926
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Comment: C: Mapping reads on ENCODEBlackListedRegion
5.2 years ago by Chirag Nepal ★ 2.4k
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2
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926
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Mapping reads on ENCODEBlackListedRegion
CAGE-seq ENCODEBlackListedRegion
5.2 years ago by Chirag Nepal ★ 2.4k
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0
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55k
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Comment: C: Adding Read Groups To Bam Files
updated 5.2 years ago by 45k • written 10.7 years ago by ★ 2.4k
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4
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2.9k
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Visualize paired end reads
RNA-Seq Paired-end alignment
updated 5.3 years ago by ▴ 170 • written 5.3 years ago by ★ 2.4k
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2.9k
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Comment: C: Visualize paired end reads
5.3 years ago by Chirag Nepal ★ 2.4k
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1
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9.5k
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Answer: A: How to find CpG island shore?
updated 5.4 years ago by 45k • written 11.0 years ago by ★ 2.4k
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0
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16k
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Comment: C: Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 2.4k
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2.3k
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Comment: C: How should I interpret these pairs of mapped CAGE reads differing in position by
updated 5.5 years ago by 45k • written 9.4 years ago by ★ 2.4k
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Comment: C: Is the expression value of miRNA precursore is equivalent to it's corresponding
updated 5.5 years ago by 45k • written 11.1 years ago by ★ 2.4k
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1
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2.2k
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Answer: A: Identify miRNA from deep RNA sequencing
updated 5.5 years ago by 45k • written 9.4 years ago by ★ 2.4k
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0
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Answer: A: FastQC of small rna-seq
updated 5.5 years ago by 45k • written 9.4 years ago by ★ 2.4k
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1
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16k
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Comment: C: Plotting Reads Around Tss
updated 5.5 years ago by 45k • written 10.8 years ago by ★ 2.4k
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0
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2.7k
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Answer: A: Finding uORFs in non-model organisms
updated 5.5 years ago by 45k • written 9.4 years ago by ★ 2.4k
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Answer: A: need to identify CDS (translation) for gene models predicted by Cufflinks and St
updated 5.5 years ago by 45k • written 9.4 years ago by ★ 2.4k
4
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1
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3.2k
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Answer: A: CAGE processing (from BAM to expression values per Gene/Isoform)
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.4k
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1
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5.4k
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Comment: C: promoter position estimation
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.4k
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1
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5.4k
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Answer: A: promoter position estimation
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.4k
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1
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2.8k
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Comment: C: Position of SNPs with respect to codon
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.4k
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0
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2.6k
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Answer: A: Why there are some genes have a same transcription start position?
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.4k
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1
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8.3k
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Comment: C: Data Set Suitable For Comparing Wgs, Exome, And Rna-Seq Data Generated From The
updated 5.5 years ago by 45k • written 10.7 years ago by ★ 2.4k
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Comment: C: Plotting Coverage - Strand specification
updated 5.5 years ago by 45k • written 9.6 years ago by ★ 2.4k
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1
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11k
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Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 5.5 years ago by 45k • written 9.6 years ago by ★ 2.4k
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1
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11k
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Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 5.5 years ago by 45k • written 9.6 years ago by ★ 2.4k
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1
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11k
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Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 5.6 years ago by 45k • written 9.6 years ago by ★ 2.4k
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0
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5.3k
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Comment: C: What causes tophat_reports error?
updated 5.6 years ago by 45k • written 9.6 years ago by ★ 2.4k
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1
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3.4k
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Comment: C: breakdancer - cfg creation and chi square problem
updated 5.6 years ago by 45k • written 9.6 years ago by ★ 2.4k
1
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1
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3.6k
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Answer: A: ChIP-seq blacklisted regions (mouse)
updated 5.6 years ago by 45k • written 9.6 years ago by ★ 2.4k
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1
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57k
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Comment: A: Any Method Of Converting Bigwig File Format Into Bed Format?
updated 5.6 years ago by 45k • written 11.9 years ago by ★ 2.4k
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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 5.6 years ago by 45k • written 10.7 years ago by ★ 2.4k
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1
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29k
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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 5.6 years ago by 45k • written 10.7 years ago by ★ 2.4k
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1
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29k
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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 5.6 years ago by 45k • written 10.7 years ago by ★ 2.4k
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1
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4.3k
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Comment: C: Varscan somatic error
updated 5.7 years ago by 45k • written 10.8 years ago by ★ 2.4k
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1
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4.3k
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Comment: C: Varscan somatic error
updated 5.7 years ago by 45k • written 10.8 years ago by ★ 2.4k
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1
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2.4k
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Answer: A: Edit distance between microRNAs
updated 5.7 years ago by 45k • written 10.9 years ago by ★ 2.4k
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0
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4.3k
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Comment: C: Can we combine adjacent peaks in ATAC-Seq fata
6.0 years ago by Chirag Nepal ★ 2.4k
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5
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2.8k
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Position of SNPs with respect to codon
Codon SNP tRNA
updated 2.9 years ago by 45k • written 9.5 years ago by ★ 2.4k
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0
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32k
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Comment: C: Drug to Target/Gene/Protein Interaction Databases
6.4 years ago by Chirag Nepal ★ 2.4k
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0
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1.7k
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Comment: C: Identifying pri-microRNA sequence from microRNA sequence
6.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.2k
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Virmid mutation calling, error
Virmid Mutation
updated 6.8 years ago by 45k • written 7.4 years ago by ★ 2.4k
308 results • Page 1 of 7
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