Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
287
views
Visium spatial transcriptomics slide with two tissue samples
Spatial-Transcriptomics Visum
updated 7 months ago by 44k • written 7 months ago by ★ 2.4k
0
votes
0
replies
338
views
find_marker_genes throws error using case_groups and control_groups
stereopy python find_marker_genes
16 months ago by Chirag Nepal ★ 2.4k
0
votes
0
replies
976
views
Comment: Comment: Two spatial transcriptomics datasets from same patient
20 months ago by Chirag Nepal ★ 2.4k
2
votes
2
replies
1.4k
views
Answer: Answer: Chipseq visualization how to draw the figure
3.5 years ago by Chirag Nepal ★ 2.4k
0
votes
0
replies
55k
views
Comment: Comment: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
3.6 years ago by Chirag Nepal ★ 2.4k
5
votes
4
replies
3.1k
views
Predict if the mutation is activating or deactivating
SNV INDEL Activating Deactivating mutations
updated 4.2 years ago by 20 • written 8.5 years ago by ★ 2.4k
0
votes
0
replies
2.8k
views
Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
4.3 years ago by Chirag Nepal ★ 2.4k
4
votes
2
replies
1.5k
views
Mapping variable read length
alignment
updated 4.4 years ago by 20 • written 7.0 years ago by ★ 2.4k
0
votes
0
replies
51k
views
Comment: C: Bam File: Change Chromosome Notation
updated 4.6 years ago by 44k • written 9.5 years ago by ★ 2.4k
0
votes
1
reply
1.3k
views
Comment: C: Find HBV integration sites in human genome.
4.9 years ago by Chirag Nepal ★ 2.4k
0
votes
3
replies
1.3k
views
Find HBV integration sites in human genome.
ChimericReads HumanVirusGenome CAGE-seq
updated 4.9 years ago by 165k • written 4.9 years ago by ★ 2.4k
0
votes
0
replies
856
views
Comment: C: Mapping reads on ENCODEBlackListedRegion
4.9 years ago by Chirag Nepal ★ 2.4k
1
vote
2
replies
856
views
Mapping reads on ENCODEBlackListedRegion
CAGE-seq ENCODEBlackListedRegion
4.9 years ago by Chirag Nepal ★ 2.4k
1
vote
0
replies
54k
views
Comment: C: Adding Read Groups To Bam Files
updated 4.9 years ago by 44k • written 10.4 years ago by ★ 2.4k
1
vote
4
replies
2.5k
views
Visualize paired end reads
RNA-Seq Paired-end alignment
updated 5.0 years ago by ▴ 170 • written 5.0 years ago by ★ 2.4k
0
votes
0
replies
2.5k
views
Comment: C: Visualize paired end reads
5.0 years ago by Chirag Nepal ★ 2.4k
4
votes
1
reply
8.9k
views
Answer: A: How to find CpG island shore?
updated 5.1 years ago by 44k • written 10.8 years ago by ★ 2.4k
0
votes
0
replies
15k
views
Comment: C: Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
updated 5.2 years ago by 44k • written 9.1 years ago by ★ 2.4k
0
votes
0
replies
2.2k
views
Comment: C: How should I interpret these pairs of mapped CAGE reads differing in position by
updated 5.2 years ago by 44k • written 9.1 years ago by ★ 2.4k
0
votes
0
replies
3.2k
views
Comment: C: Is the expression value of miRNA precursore is equivalent to it's corresponding
updated 5.2 years ago by 44k • written 10.8 years ago by ★ 2.4k
1
vote
1
reply
2.1k
views
Answer: A: Identify miRNA from deep RNA sequencing
updated 5.2 years ago by 44k • written 9.1 years ago by ★ 2.4k
1
vote
0
replies
5.8k
views
Answer: A: FastQC of small rna-seq
updated 5.2 years ago by 44k • written 9.1 years ago by ★ 2.4k
0
votes
1
reply
15k
views
Comment: C: Plotting Reads Around Tss
updated 5.2 years ago by 44k • written 10.5 years ago by ★ 2.4k
0
votes
0
replies
2.5k
views
Answer: A: Finding uORFs in non-model organisms
updated 5.2 years ago by 44k • written 9.1 years ago by ★ 2.4k
0
votes
0
replies
2.7k
views
Answer: A: need to identify CDS (translation) for gene models predicted by Cufflinks and St
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 2.4k
4
votes
1
reply
3.1k
views
Answer: A: CAGE processing (from BAM to expression values per Gene/Isoform)
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 2.4k
1
vote
1
reply
5.1k
views
Comment: C: promoter position estimation
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 2.4k
1
vote
1
reply
5.1k
views
Answer: A: promoter position estimation
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 2.4k
0
votes
1
reply
2.7k
views
Comment: C: Position of SNPs with respect to codon
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 2.4k
0
votes
0
replies
2.5k
views
Answer: A: Why there are some genes have a same transcription start position?
updated 5.2 years ago by 44k • written 9.2 years ago by ★ 2.4k
0
votes
1
reply
8.0k
views
Comment: C: Data Set Suitable For Comparing Wgs, Exome, And Rna-Seq Data Generated From The
updated 5.2 years ago by 44k • written 10.4 years ago by ★ 2.4k
0
votes
0
replies
3.6k
views
Comment: C: Plotting Coverage - Strand specification
updated 5.2 years ago by 44k • written 9.3 years ago by ★ 2.4k
1
vote
1
reply
11k
views
Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 5.3 years ago by 44k • written 9.3 years ago by ★ 2.4k
0
votes
1
reply
11k
views
Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 5.3 years ago by 44k • written 9.3 years ago by ★ 2.4k
0
votes
1
reply
11k
views
Comment: C: Extracting from tophat outputs reads pairs and splice-junctions with a single be
updated 5.3 years ago by 44k • written 9.3 years ago by ★ 2.4k
0
votes
0
replies
4.9k
views
Comment: C: What causes tophat_reports error?
updated 5.3 years ago by 44k • written 9.3 years ago by ★ 2.4k
0
votes
1
reply
3.2k
views
Comment: C: breakdancer - cfg creation and chi square problem
updated 5.3 years ago by 44k • written 9.3 years ago by ★ 2.4k
1
vote
1
reply
3.5k
views
Answer: A: ChIP-seq blacklisted regions (mouse)
updated 5.3 years ago by 44k • written 9.4 years ago by ★ 2.4k
0
votes
1
reply
55k
views
Comment: A: Any Method Of Converting Bigwig File Format Into Bed Format?
updated 5.3 years ago by 44k • written 11.6 years ago by ★ 2.4k
0
votes
0
replies
28k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 5.3 years ago by 44k • written 10.4 years ago by ★ 2.4k
0
votes
1
reply
28k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 5.3 years ago by 44k • written 10.4 years ago by ★ 2.4k
0
votes
1
reply
28k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
updated 5.3 years ago by 44k • written 10.4 years ago by ★ 2.4k
0
votes
1
reply
4.1k
views
Comment: C: Varscan somatic error
updated 5.4 years ago by 44k • written 10.5 years ago by ★ 2.4k
0
votes
1
reply
4.1k
views
Comment: C: Varscan somatic error
updated 5.4 years ago by 44k • written 10.5 years ago by ★ 2.4k
0
votes
1
reply
2.2k
views
Answer: A: Edit distance between microRNAs
updated 5.4 years ago by 44k • written 10.6 years ago by ★ 2.4k
1
vote
0
replies
3.9k
views
Comment: C: Can we combine adjacent peaks in ATAC-Seq fata
5.7 years ago by Chirag Nepal ★ 2.4k
0
votes
5
replies
2.7k
views
Position of SNPs with respect to codon
Codon SNP tRNA
updated 2.6 years ago by 44k • written 9.2 years ago by ★ 2.4k
0
votes
0
replies
31k
views
Comment: C: Drug to Target/Gene/Protein Interaction Databases
6.1 years ago by Chirag Nepal ★ 2.4k
0
votes
0
replies
1.6k
views
Comment: C: Identifying pri-microRNA sequence from microRNA sequence
6.3 years ago by Chirag Nepal ★ 2.4k
0
votes
0
replies
1.2k
views
Virmid mutation calling, error
Virmid Mutation
updated 6.5 years ago by 44k • written 7.1 years ago by ★ 2.4k
308 results • Page 1 of 7
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6