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Comment: C: I'm putting a pipeline into docker, where do I store the tar files for my depend
6.9 years ago by SaltedPork ▴ 170
3
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4
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2.6k
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I'm putting a pipeline into docker, where do I store the tar files for my dependencies, on GitHub or within the Docker image?
docker pipeline
updated 6.9 years ago by ★ 2.2k • written 6.9 years ago by ▴ 170
0
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7.7k
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Comment: C: How to split fasta by '>' into a file each containing one sequence, and have the
6.9 years ago by SaltedPork ▴ 170
0
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1
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7.7k
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Comment: C: How to split fasta by '>' into a file each containing one sequence, and have the
6.9 years ago by SaltedPork ▴ 170
13
votes
7
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7.7k
views
How to split fasta by '>' into a file each containing one sequence, and have the name of that file be the ID?
fasta bash split
updated 6.9 years ago by 164k • written 6.9 years ago by ▴ 170
8
votes
4
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2.6k
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How can I run lastz on multiple files using a bash loop and an associative array?
bash
updated 17 months ago by 44k • written 6.9 years ago by ▴ 170
0
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0
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2.6k
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Comment: C: How can I run lastz on multiple files using a bash loop and an associative array
6.9 years ago by SaltedPork ▴ 170
0
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0
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3.7k
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Comment: C: How can I split a fasta file into many files, one file for each ID line and its
6.9 years ago by SaltedPork ▴ 170
5
votes
4
replies
3.7k
views
How can I split a fasta file into many files, one file for each ID line and its sequence
fasta split
updated 6.9 years ago by 147k • written 6.9 years ago by ▴ 170
4
votes
5
replies
1.8k
views
How can I calculate coverage from the base frequencies file?
coverage basefrequency frequency
updated 6.9 years ago by 21k • written 6.9 years ago by ▴ 170
0
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0
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1.8k
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Comment: C: How can I calculate coverage from the base frequencies file?
6.9 years ago by SaltedPork ▴ 170
0
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1
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3.5k
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Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
7.0 years ago by SaltedPork ▴ 170
1
vote
1
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3.5k
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Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
7.0 years ago by SaltedPork ▴ 170
15
votes
15
replies
3.5k
views
Printing specific sequence and ID from combined fasta file using bash commands
fasta bash
updated 7.0 years ago by 164k • written 7.0 years ago by ▴ 170
0
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2
replies
3.5k
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Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
7.0 years ago by SaltedPork ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: Printing specific sequence and ID from combined fasta file using bash commands
7.0 years ago by SaltedPork ▴ 170
2
votes
2
replies
4.2k
views
How can I extract sequence from a SAM file, with coordinates
sam samtools
8.0 years ago by SaltedPork ▴ 170
1
vote
5
replies
1.9k
views
How can I assign sequence length to an ID in a FASTA file using Perl?
Perl fasta
updated 8.0 years ago by 14k • written 8.0 years ago by ▴ 170
0
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1
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1.9k
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Comment: C: How can I assign sequence length to an ID in a FASTA file using Perl?
8.0 years ago by SaltedPork ▴ 170
0
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0
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1.9k
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Comment: C: How can I assign sequence length to an ID in a FASTA file using Perl?
8.0 years ago by SaltedPork ▴ 170
0
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0
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2.4k
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Comment: C: How do I extract read ID after using the Bedtools genome coverage tool?
8.0 years ago by SaltedPork ▴ 170
0
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1
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2.4k
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Comment: C: How do I extract read ID after using the Bedtools genome coverage tool?
8.0 years ago by SaltedPork ▴ 170
0
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1
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2.4k
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Comment: C: How do I extract read ID after using the Bedtools genome coverage tool?
8.0 years ago by SaltedPork ▴ 170
3
votes
6
replies
2.4k
views
How do I extract read ID after using the Bedtools genome coverage tool?
bedtools coverage histogram
updated 8.0 years ago by 12k • written 8.0 years ago by ▴ 170
0
votes
0
replies
1.1k
views
How can I extract sequence from the human reference that maps to end sequences from FOSMIDs?
fosmid human reference
8.0 years ago by SaltedPork ▴ 170
3
votes
1
reply
3.5k
views
How can I use Samtools to map coverage distribution?
samtools coverage distribution
8.1 years ago by SaltedPork ▴ 170
5
votes
3
replies
2.9k
views
Parsing Read ID's out of a SAM file
SAM Perl Parsing
updated 8.1 years ago by 104k • written 8.1 years ago by ▴ 170
0
votes
1
reply
10k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
8.1 years ago by SaltedPork ▴ 170
0
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1
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10k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
8.1 years ago by SaltedPork ▴ 170
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