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2.0k
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Answer: A: orthologue mapping using circos
8.0 years ago by Matteo Schiavinato ★ 3.6k
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0
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2.5k
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Comment: C: Is Pindel slow for everyone, or should I review my command?
8.0 years ago by Matteo Schiavinato ★ 3.6k
1
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4
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2.5k
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Is Pindel slow for everyone, or should I review my command?
Pindel Variant Structural Program Detection
8.0 years ago by Matteo Schiavinato ★ 3.6k
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0
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2.7k
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Answer: A: bowtie2 --un option problems
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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22k
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Comment: C: Remove duplicates from reads: best practices?
8.0 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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7.8k
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Comment: C: RNA seq analysis using STAR+StringTie
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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22k
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Comment: C: Remove duplicates from reads: best practices?
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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22k
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Comment: C: Remove duplicates from reads: best practices?
8.0 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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2.1k
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Comment: C: meta analysis of result of RNA-Seq data analysis
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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7.8k
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Comment: C: RNA seq analysis using STAR+StringTie
8.0 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.9k
views
Quality, MQ0F, other parameters for proper VCF filtering
SNP alignment genome variant VCF
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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22k
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Comment: C: Remove duplicates from reads: best practices?
8.0 years ago by Matteo Schiavinato ★ 3.6k
12
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9
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22k
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Remove duplicates from reads: best practices?
RNA-Seq sequence alignment deduplication next-gen
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.2k
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Comment: C: Analyse VCF file to find snps common to all samples in lineage
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.2k
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Comment: C: Analyse VCF file to find snps common to all samples in lineage
8.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.4k
views
Answer: A: Error sorted paired-end .bam using samtools
8.1 years ago by Matteo Schiavinato ★ 3.6k
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0
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4.2k
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Comment: C: HTSeq not counting all the fragments it should count on a gene
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.5k
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Comment: C: StringTie with Ensembl annotation: Fuzzy exon identification
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.7k
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Comment: C: Trimmomatic for RNA-seq or Whole genome seuencing or for both?
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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2.1k
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Answer: A: RNA-Seq analysis and biological replicates.
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
reply
2.5k
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Answer: A: StringTie with Ensembl annotation: Fuzzy exon identification
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
reply
4.2k
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Comment: C: HTSeq not counting all the fragments it should count on a gene
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.2k
views
Comment: C: HTSeq not counting all the fragments it should count on a gene
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.7k
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Comment: C: Retrieval of chromosomal coordinates of coding sequences (CDS)
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.2k
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Comment: C: HTSeq not counting all the fragments it should count on a gene
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
reply
2.7k
views
Answer: A: Retrieval of chromosomal coordinates of coding sequences (CDS)
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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5.7k
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Answer: A: How to extract information from a VCF file
8.1 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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2.7k
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Answer: A: beginner question about Trimmomatic
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.2k
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Comment: C: HTSeq not counting all the fragments it should count on a gene
8.1 years ago by Matteo Schiavinato ★ 3.6k
10
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10
replies
4.2k
views
HTSeq not counting all the fragments it should count on a gene
RNA-Seq HTSeq gene expression counts
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.2k
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Comment: C: HTSeq not counting all the fragments it should count on a gene
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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7.3k
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Comment: C: Raw Read count from bam file
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
reply
7.3k
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Comment: C: Raw Read count from bam file
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
reply
7.3k
views
Comment: C: Raw Read count from bam file
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.8k
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Comment: C: No CDS in Cuffdiff output !
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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5.6k
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Comment: C: DESeq2 proper design setting
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
reply
5.6k
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Comment: C: DESeq2 proper design setting
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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2
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5.6k
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Comment: C: DESeq2 proper design setting
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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5.6k
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Comment: C: DESeq2 proper design setting
8.1 years ago by Matteo Schiavinato ★ 3.6k
17
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9
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5.6k
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DESeq2 proper design setting
DESeq2 Differential Expression Design RNA-Seq
updated 8.1 years ago by 8.9k • written 8.1 years ago by ★ 3.6k
1
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0
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8.3k
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Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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8.3k
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Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
vote
1
reply
8.3k
views
Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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2.5k
views
Answer: A: How to identify the different varieties of same species in Plants?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.1k
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Comment: C: Cutadapt: two versions two results
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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8.3k
views
Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.1k
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Comment: C: Cutadapt: two versions two results
8.1 years ago by Matteo Schiavinato ★ 3.6k
4
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3
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2.4k
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VCF Format INFO field: why do some keys in it not appear in the documentation?
VCF SNP Variants Format Calling
updated 8.1 years ago by 164k • written 8.1 years ago by ★ 3.6k
0
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1
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2.5k
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Comment: C: How to identify the different varieties of same species in Plants?
8.1 years ago by Matteo Schiavinato ★ 3.6k
2
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1
reply
8.3k
views
Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
600 results • Page 11 of 12
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