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Comment: C: How to convert .bed file to .juncs file using Tophat?
8.1 years ago by Matteo Schiavinato ★ 3.6k
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2.2k
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Comment: C: looking for RNA-seq pipeline
8.1 years ago by Matteo Schiavinato ★ 3.6k
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1
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2.2k
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Comment: C: looking for RNA-seq pipeline
8.1 years ago by Matteo Schiavinato ★ 3.6k
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1
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1.5k
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Comment: C: bowtie2 mapped read coordinates exceed transcript length
8.1 years ago by Matteo Schiavinato ★ 3.6k
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1
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1.5k
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Comment: C: bowtie2 mapped read coordinates exceed transcript length
8.1 years ago by Matteo Schiavinato ★ 3.6k
3
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1
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8.3k
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Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
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0
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4.5k
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Answer: A: How to remove adapters from DNA-seq illumina reads?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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8.3k
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Comment: C: How to add tophat and bowtie to the path?
8.1 years ago by Matteo Schiavinato ★ 3.6k
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0
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1.9k
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Comment: C: HTSeq count versus summarizeOverlaps, mismathc of exon counts
8.1 years ago by Matteo Schiavinato ★ 3.6k
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2
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2.1k
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Comment: C: Cutadapt: two versions two results
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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7.3k
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Answer: A: Broken vcf header, no column name?
8.1 years ago by Matteo Schiavinato ★ 3.6k
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1
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2.1k
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Answer: A: Convert DNA Sequences into numerical vectors for R / Weka classification using N
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.1k
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Comment: C: Cutadapt: two versions two results
8.1 years ago by Matteo Schiavinato ★ 3.6k
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0
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2.6k
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Comment: C: High p-values generated from CuffDiff
8.1 years ago by Matteo Schiavinato ★ 3.6k
3
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1
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2.1k
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Answer: A: How to convert .bed file to .juncs file using Tophat?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.1k
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Comment: C: How to convert .bed file to .juncs file using Tophat?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.6k
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Comment: C: Error for hisat2 index for human genome
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.6k
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Answer: A: Error for hisat2 index for human genome
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.2k
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Comment: C: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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4.8k
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Comment: C: Strange MA-plot using DESeq2
8.1 years ago by Matteo Schiavinato ★ 3.6k
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2
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3.0k
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Answer: A: Fastq to Fasta file
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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9.4k
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Answer: A: What is a "draft genome assembly"?
8.1 years ago by Matteo Schiavinato ★ 3.6k
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0
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2.0k
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Comment: C: how to filter cuffdiff results by alignment count?
8.1 years ago by Matteo Schiavinato ★ 3.6k
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0
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3.2k
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Answer: A: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.2k
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Comment: C: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.0k
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Comment: C: Allele specific expression (ASE) using unfiltered reads from RNA-seq data?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.2k
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Answer: A: Test fold change significany using duplicate reference transcriptome (RNA-Seq)
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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1.8k
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Answer: A: Best tool for finding Boundary Pairs
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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1.8k
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Comment: C: Best tool for finding Boundary Pairs
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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1.8k
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Comment: C: Best tool for finding Boundary Pairs
8.1 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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3.0k
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Answer: A: Search for reads aligned to multiple chromosomes
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.3k
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Comment: C: babelomics for RNA seq analysis
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: How do you people tell if a gene is really present in the sample after mapping t
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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1.8k
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Comment: A: Denovo transcript assembly with data from different library types.
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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6.7k
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Comment: C: HISAT2-StringTie-Cuffdiff error: BAM record error: found spliced alignment witho
8.1 years ago by Matteo Schiavinato ★ 3.6k
2
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2
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6.7k
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Answer: A: HISAT2-StringTie-Cuffdiff error: BAM record error: found spliced alignment witho
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.3k
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Comment: C: overlap sequences in two assemblies
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.2k
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Answer: A: is there any source for TF(transcription factor)-TG(target gene)?
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.2k
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Comment: C: Number of reads mapped to genome
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.6k
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Comment: C: Why does bcftools call show variants with genotype 0/0 ?
8.1 years ago by Matteo Schiavinato ★ 3.6k
6
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8
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2.6k
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Why does bcftools call show variants with genotype 0/0 ?
genotype reference bcftools call variant calling
8.1 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.6k
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Comment: C: Why does bcftools call show variants with genotype 0/0 ?
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.1k
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Comment: C: tophat --max-multihits impacts 'mapped in a proper pair'
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
reply
2.5k
views
Answer: A: How do you people tell if a gene is really present in the sample after mapping t
8.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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3.1k
views
Comment: C: tophat --max-multihits impacts 'mapped in a proper pair'
8.2 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Answer: A: How do you people tell if a gene is really present in the sample after mapping t
8.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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5.9k
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Answer: A: using soap de novo assembly
8.2 years ago by Matteo Schiavinato ★ 3.6k
4
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1
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3.1k
views
Answer: A: tophat --max-multihits impacts 'mapped in a proper pair'
8.2 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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33k
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Comment: C: GT and GL fields in VCF file
8.2 years ago by Matteo Schiavinato ★ 3.6k
0
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1
reply
33k
views
Comment: C: GT and GL fields in VCF file
8.2 years ago by Matteo Schiavinato ★ 3.6k
600 results • Page 12 of 12
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