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Comment: C: Trimmomatic; How to get only q20 < q < q30 reads
5.2 years ago by Matteo Schiavinato ★ 3.6k
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1
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2.6k
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Comment: C: Trimmomatic; How to get only q20 < q < q30 reads
5.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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5.6k
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Comment: C: cutoff for expressed genes in DESeq2
5.2 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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5.6k
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Answer: A: cutoff for expressed genes in DESeq2
5.2 years ago by Matteo Schiavinato ★ 3.6k
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0
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10k
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Comment: C: Remove part of headers in FASTA file
5.2 years ago by Matteo Schiavinato ★ 3.6k
9
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1
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10k
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Answer: A: Remove part of headers in FASTA file
5.2 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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10k
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Comment: C: Remove part of headers in FASTA file
5.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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7.2k
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Answer: A: TPM or FPKM for single cell RNA seq experiment ?
5.2 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.6k
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Comment: C: Losing reads from bam to fastq
5.2 years ago by Matteo Schiavinato ★ 3.6k
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0
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2.3k
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Comment: C: Pipe pysam.view() output to pysam.sort()
5.2 years ago by Matteo Schiavinato ★ 3.6k
1
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3
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2.3k
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Pipe pysam.view() output to pysam.sort()
pysam sam alignment python sort
updated 5.2 years ago by ★ 2.2k • written 5.2 years ago by ★ 3.6k
0
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1
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2.6k
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Answer: A: Losing reads from bam to fastq
5.2 years ago by Matteo Schiavinato ★ 3.6k
1
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2
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2.5k
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Extracting divergence times from 4DTv
variants divergence time 4DTv substitution
updated 5.3 years ago by 20 • written 6.1 years ago by ★ 3.6k
1
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0
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3.9k
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Comment: C: snpEff installation, unable to download reference genome
5.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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695
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Are GD format files (gdtools) 0-based?
genomediff
updated 21 months ago by 44k • written 5.4 years ago by ★ 3.6k
0
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0
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2.5k
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Comment: C: Assembler MaSuRCA (v 3.3.3) installation error
5.4 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.6k
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Answer: A: Split multi fasta based on line header
5.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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677
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Answer: A: Where I can download index files for Rousettus aegyptiacus?
5.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: Assembler MaSuRCA (v 3.3.3) installation error
5.4 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.6k
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Answer: A: How to annotate FASTA genome using GFF genes from another genome?
5.4 years ago by Matteo Schiavinato ★ 3.6k
1
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11
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3.6k
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How to annotate FASTA genome using GFF genes from another genome?
FASTA GFF annotation program genome
5.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.6k
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Comment: C: How to annotate FASTA genome using GFF genes from another genome?
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.6k
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Comment: C: How to annotate FASTA genome using GFF genes from another genome?
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.6k
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Comment: C: How to annotate FASTA genome using GFF genes from another genome?
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
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2
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3.6k
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Comment: C: How to annotate FASTA genome using GFF genes from another genome?
5.5 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.9k
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Comment: C: RepeatModeler - FastaDB error
5.6 years ago by Matteo Schiavinato ★ 3.6k
2
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2
replies
2.0k
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Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
mpileup variant SNP call RPB
updated 5.6 years ago by ▴ 50 • written 6.6 years ago by ★ 3.6k
9
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5
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4.9k
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CIGAR operations performed according to strand or to read?
read sequencing cigar sam format
updated 5.7 years ago by • 0 • written 7.1 years ago by ★ 3.6k
1
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0
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9.3k
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Comment: C: Interpretation of Trimmomatic Results after Paired-End Adapter Trimming
5.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.6k
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Comment: C: Bowtie2 mapped just 50% of the reads
5.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.5k
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Answer: A: Extracting divergence times from 4DTv
6.0 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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3.7k
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Comment: C: Trimmomatic: LEADING and TRAILING
6.0 years ago by Matteo Schiavinato ★ 3.6k
2
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1
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3.7k
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Answer: A: Trimmomatic: LEADING and TRAILING
6.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.0k
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Comment: C: ETE3 TreeError: 'Nodes are not connected!': how to fix?
6.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.0k
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Comment: C: ETE3 TreeError: 'Nodes are not connected!': how to fix?
6.0 years ago by Matteo Schiavinato ★ 3.6k
0
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6
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3.0k
views
ETE3 TreeError: 'Nodes are not connected!': how to fix?
ETE phylome phylogenetics nodes TreeError
6.0 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.6k
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Comment: C: How to calculate 4DTv distance (D4DTv) that stands for fourfold synonymous thir
6.1 years ago by Matteo Schiavinato ★ 3.6k
1
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1
reply
3.3k
views
SplitsTree command line mode
SplitsTree phylogeny network command line pipeline
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.3k
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Answer: A: SplitsTree command line mode
6.2 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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1.5k
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Comment: C: 4/6 genotype in VCF
6.3 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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1.5k
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Comment: C: 4/6 genotype in VCF
6.3 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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6.0k
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Comment: C: what is the easiest/fastest way to convert from BAM to GTF
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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5.6k
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Answer: A: how specify feature type in featureCounts
6.3 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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1.5k
views
Comment: C: 4/6 genotype in VCF
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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4.5k
views
Comment: C: hisat2 warning message dunring alignment of fasta file with reference genome
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.7k
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Comment: C: Problems running variant calling (VC) GATK: SAM/BAM/CRAM file dedup.bam is malfo
6.3 years ago by Matteo Schiavinato ★ 3.6k
3
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1
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3.7k
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Answer: A: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.1k
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Comment: C: featurecounts more fragments than input read pairs
6.3 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.2k
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Comment: C: Getting a distinct set of Gene Ontology terms
6.3 years ago by Matteo Schiavinato ★ 3.6k
1
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0
replies
3.4k
views
Comment: C: rsem-calculate-expression error message
6.3 years ago by Matteo Schiavinato ★ 3.6k
600 results • Page 2 of 12
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