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Comment: C: Differential gene expression from RNAseq data. Before or after annotation?
6.9 years ago by Matteo Schiavinato ★ 3.6k
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1
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4.8k
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Answer: A: Differential gene expression from RNAseq data. Before or after annotation?
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.2k
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Answer: A: Estimating percentage of overlap bewteen sam/bam/bed files
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.9k
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Comment: C: error in execution of Trimmomatic 0.36
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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1.7k
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Answer: A: Best method to assemble low-abundance transcripts?
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.3k
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Answer: A: Genome DNA sequence pattern matching
6.9 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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1.9k
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Answer: A: Calculating gene/exon coverage
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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4.5k
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Answer: A: Which tool is best for Annotation of human vcf files (Snpeff or VEP or Annovar)
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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3.9k
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Answer: A: error in execution of Trimmomatic 0.36
6.9 years ago by Matteo Schiavinato ★ 3.6k
5
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1
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1.8k
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Answer: A: Explanation of a Perl script
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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1.0k
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Answer: A: Coverage of 320; Would it be useful to perform very stringent filtering?
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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14k
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Comment: C: Writing vcf file headers
6.9 years ago by Matteo Schiavinato ★ 3.6k
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1
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14k
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Comment: C: Writing vcf file headers
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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14k
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Comment: C: Writing vcf file headers
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
reply
14k
views
Comment: C: Writing vcf file headers
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.2k
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Comment: C: SNP in a specific loci
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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2
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8.7k
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Comment: C: snpEFF not able to download GRCH38 ?
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.5k
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Comment: C: Sequences information from BAM file
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: Sequences information from BAM file
6.9 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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1.9k
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Comment: C: try command in R
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: Sequences information from BAM file
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: Sequences information from BAM file
6.9 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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2.1k
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Answer: A: How to fetch those line having only similar characters.
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.1k
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Comment: C: How to fetch those line having only similar characters.
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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917
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Comment: C: Error on HT-Seq-count while RNA quantification
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.9k
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Comment: C: VCF format tool question
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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1.9k
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Comment: C: VCF format tool question
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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6.8k
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Comment: C: Extending ends of sequences with the help of reads?
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.1k
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Comment: C: run_BUSCO.py fails with segmentation fault with -c option
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.6k
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Comment: C: Improving the mapping rate by aligner parameters
6.9 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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6.9k
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Comment: C: How to select uniquely and concordantly reads from hisat2 alingment for raw read
7.0 years ago by Matteo Schiavinato ★ 3.6k
4
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0
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3.9k
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Answer: A: How to remove split/broken reads from bam file
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.1k
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Answer: A: paired-end read: background + practical question - Strainphlan pipeline
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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2.2k
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Answer: A: Cufflinks gives only CUFF names with a gtf.
7.0 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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6.0k
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Answer: A: Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
7.0 years ago by Matteo Schiavinato ★ 3.6k
5
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2
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6.9k
views
Answer: A: How to select uniquely and concordantly reads from hisat2 alingment for raw read
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.0k
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Comment: C: Trimmomatic error "Exception processing reads"
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.0k
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Comment: C: Trimmomatic error "Exception processing reads"
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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1
reply
7.7k
views
Comment: C: HTSEq-Count returns 0 counts for all genes in the counts file!
7.0 years ago by Matteo Schiavinato ★ 3.6k
2
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2
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2.1k
views
Answer: A: Sub_sampling Paired_end reads in Fastq.gz format.
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.5k
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Comment: C: Why does cufflinks split this transcript?
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.0k
views
Comment: C: how to make bwa search the entire sequence?
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.5k
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Comment: C: Calculate TPM from cuffnorm count data
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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2
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3.5k
views
Comment: C: Why does cufflinks split this transcript?
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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1.3k
views
Comment: C: How to align reads to only one strand on a haploid reference genome?
7.0 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.5k
views
Comment: C: Why does cufflinks split this transcript?
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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2.3k
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Comment: C: Which aligment tool is best for eukaryotic transcriptome?
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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2.3k
views
Comment: C: Which aligment tool is best for eukaryotic transcriptome?
7.0 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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3.5k
views
Comment: C: Why does cufflinks split this transcript?
7.0 years ago by Matteo Schiavinato ★ 3.6k
2
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2
replies
2.3k
views
Answer: A: Which aligment tool is best for eukaryotic transcriptome?
7.0 years ago by Matteo Schiavinato ★ 3.6k
600 results • Page 4 of 12
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