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Does it make sense to limit insert size when mapping on transcriptome?
RNA-seq transcriptome
updated 21 months ago by 44k • written 7.3 years ago by ★ 3.6k
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1
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2.2k
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Comment: C: refseq transcriptome annotation
7.3 years ago by Matteo Schiavinato ★ 3.6k
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3.7k
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Comment: C: Rename the fasta entries in Unix or R
7.3 years ago by Matteo Schiavinato ★ 3.6k
3
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1
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8.5k
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Answer: A: hisat2 parameters for paired end and single end reads from same samples
7.3 years ago by Matteo Schiavinato ★ 3.6k
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2
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4.6k
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Comment: C: Very high alignment rate with bowtie2
7.3 years ago by Matteo Schiavinato ★ 3.6k
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3.7k
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Answer: A: Rename the fasta entries in Unix or R
7.3 years ago by Matteo Schiavinato ★ 3.6k
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0
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1.5k
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Answer: A: awesome cancer genomics
7.3 years ago by Matteo Schiavinato ★ 3.6k
2
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3
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2.7k
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SAM Flags for illumina paired-end reads mapped on transcriptome
sam flags transcriptome alignment paired-end
updated 7.3 years ago by 105k • written 7.3 years ago by ★ 3.6k
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2.6k
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Comment: C: what to do when adjusted p-values are not acceptable in RNASeq?
7.3 years ago by Matteo Schiavinato ★ 3.6k
1
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3.6k
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Comment: C: Reads at position using samtools mpileup
7.3 years ago by Matteo Schiavinato ★ 3.6k
2
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0
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956
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Subgenomes separation in hybrid species
Assembly genome sequencing SNP RNA-Seq
7.3 years ago by Matteo Schiavinato ★ 3.6k
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0
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16k
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Comment: C: FASTA file into excel file format?
7.3 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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16k
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Comment: C: FASTA file into excel file format?
7.3 years ago by Matteo Schiavinato ★ 3.6k
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0
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8.2k
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Comment: C: PSIPRED, how to install and make it work?
7.4 years ago by Matteo Schiavinato ★ 3.6k
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0
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9.6k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
7.4 years ago by Matteo Schiavinato ★ 3.6k
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1
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5.0k
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Comment: C: Genome Browser suggestions
7.4 years ago by Matteo Schiavinato ★ 3.6k
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0
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5.0k
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Comment: C: Genome Browser suggestions
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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9.6k
views
Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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9.6k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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3.2k
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Comment: C: How to count reads mapped to multiple loci?
7.4 years ago by Matteo Schiavinato ★ 3.6k
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0
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2.5k
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Comment: C: Creation of Transcript expression file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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9.6k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: Creation of Transcript expression file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
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Comment: C: Creation of Transcript expression file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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9.6k
views
Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.5k
views
Comment: C: Creation of Transcript expression file
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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4.1k
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Comment: C: Best way to compare expression values between two groups
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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8.7k
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Comment: C: Calculating FPKM from HTSeq counts table
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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4.1k
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Comment: C: Best way to compare expression values between two groups
7.4 years ago by Matteo Schiavinato ★ 3.6k
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0
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1.7k
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Comment: C: Alignment of two different file format
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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1.3k
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Comment: C: Cannot calculate order statistic on object with 3 columns in R
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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2.7k
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Answer: A: Locate short DNA sequence from fasta file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.2k
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Answer: A: BAM Index Chunks
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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0
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6.0k
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Comment: C: Python Regular Expressions to extract the transcript ID from lines of GTF file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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6.0k
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Answer: A: Python Regular Expressions to extract the transcript ID from lines of GTF file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.2k
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Answer: A: How to count reads mapped to multiple loci?
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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5.0k
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Comment: C: Genome Browser suggestions
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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5.0k
views
Comment: C: Genome Browser suggestions
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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2
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5.0k
views
Comment: C: Genome Browser suggestions
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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5.0k
views
Comment: C: Genome Browser suggestions
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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2.0k
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Comment: C: How to identify the SiRNA abundance from transcriptome data
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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2.0k
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Comment: C: How to identify the SiRNA abundance from transcriptome data
7.4 years ago by Matteo Schiavinato ★ 3.6k
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0
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1.8k
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Comment: C: Difficulty in installing MAKER
7.4 years ago by Matteo Schiavinato ★ 3.6k
1
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1
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33k
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Comment: C: GT and GL fields in VCF file
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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3.9k
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Comment: C: calculate RPKM from read count and gff by galaxy
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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0
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4.1k
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Comment: C: How to Fix Error in snpeff
7.4 years ago by Matteo Schiavinato ★ 3.6k
45
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4
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24k
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Best way to compare two samples in a VCF file
VCF Variant Genotype Comparison SNP
updated 17 months ago by 44k • written 8.1 years ago by ★ 3.6k
0
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0
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1.9k
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Answer: A: To screen for a good aligner
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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1
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3.9k
views
Answer: A: calculate RPKM from read count and gff by galaxy
7.4 years ago by Matteo Schiavinato ★ 3.6k
0
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2
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4.1k
views
Comment: C: How to Fix Error in snpeff
7.4 years ago by Matteo Schiavinato ★ 3.6k
600 results • Page 7 of 12
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