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Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.0 years ago by Raheleh ▴ 260
0
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1
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2.7k
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Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.0 years ago by Raheleh ▴ 260
0
votes
1
reply
2.7k
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Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.0 years ago by Raheleh ▴ 260
2
votes
14
replies
2.7k
views
how to plot lollipop in which dots show mean/median for each variable?
lollipop plot ggplot2
updated 5.0 years ago by 10k • written 5.0 years ago by ▴ 260
1
vote
3
replies
3.1k
views
What should be reported as Hazard Ratio in Kaplan Meier curve?
survival Hazard Ratio kaplan meier
updated 5.1 years ago by ▴ 10 • written 5.1 years ago by ▴ 260
0
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1
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6.6k
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Comment: A: RIP-Seq data analysis
5.1 years ago by Raheleh ▴ 260
0
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0
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963
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Prediction Analysis for Microarrays (PAM) method can be used for RNAseq data?
PAMR RNAseq prediction
5.2 years ago by Raheleh ▴ 260
0
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0
replies
1.0k
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Comment: C: Best statistical test to compare the performance of small classifiers?
5.2 years ago by Raheleh ▴ 260
0
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1
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1.0k
views
Comment: C: Best statistical test to compare the performance of small classifiers?
5.2 years ago by Raheleh ▴ 260
1
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4
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1.0k
views
Best statistical test to compare the performance of small classifiers?
Statistical test classifier Fisher's exact test
updated 5.2 years ago by 89k • written 5.2 years ago by ▴ 260
2
votes
1
reply
890
views
Pathway enrichment analysis for a small set of genes
GSEA gene signature pathway enrichment analysis
updated 5.2 years ago by ★ 7.2k • written 5.2 years ago by ▴ 260
4
votes
4
replies
8.9k
views
How to add Hazard ratio value into Kaplan Meier plot?
kaplan meier Hazard Ratio r ggsurvplot
5.2 years ago by Raheleh ▴ 260
0
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1
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8.9k
views
Comment: C: How to add Hazard ratio value into Kaplan Meier plot?
5.2 years ago by Raheleh ▴ 260
0
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0
replies
1.6k
views
Comment: C: Problem with UpSetR result
5.2 years ago by Raheleh ▴ 260
0
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2
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1.6k
views
Problem with UpSetR result
UpSetR Intersections upset
updated 5.2 years ago by 5.8k • written 5.2 years ago by ▴ 260
9
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8
replies
12k
views
How to plot GSEA result?
GSEA plot fgsea r plotEnrichment
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by ▴ 260
0
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1
reply
12k
views
Comment: C: How to plot GSEA result?
5.3 years ago by Raheleh ▴ 260
0
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2
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22k
views
Comment: C: Clustering of DAVID gene enrichment results from gene expression studies
5.4 years ago by Raheleh ▴ 260
0
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2
replies
22k
views
Comment: C: Clustering of DAVID gene enrichment results from gene expression studies
5.4 years ago by Raheleh ▴ 260
0
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1
reply
1.3k
views
Comment: C: How to identify best predictors in lasso-penalised model?
5.4 years ago by Raheleh ▴ 260
0
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1
reply
1.3k
views
Comment: C: How to identify best predictors in lasso-penalised model?
5.4 years ago by Raheleh ▴ 260
2
votes
5
replies
1.3k
views
How to identify best predictors in lasso-penalised model?
lasso-penalised Coefficient predictor
updated 5.4 years ago by 27k • written 5.4 years ago by ▴ 260
0
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0
replies
7.3k
views
Comment: C: Building a predictive model by a list of genes
updated 5.4 years ago by 149k • written 5.4 years ago by ▴ 260
0
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1
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7.3k
views
Comment: C: Building a predictive model by a list of genes
5.4 years ago by Raheleh ▴ 260
0
votes
1
reply
7.3k
views
Comment: C: Building a predictive model by a list of genes
5.4 years ago by Raheleh ▴ 260
0
votes
1
reply
7.3k
views
Comment: C: Building a predictive model by a list of genes
5.4 years ago by Raheleh ▴ 260
0
votes
1
reply
7.3k
views
Comment: C: Building a predictive model by a list of genes
5.4 years ago by Raheleh ▴ 260
0
votes
1
reply
1.4k
views
Comment: C: huge difference of expression value of different probes for the same gene. Why?
5.5 years ago by Raheleh ▴ 260
4
votes
7
replies
1.4k
views
huge difference of expression value of different probes for the same gene. Why?
Probe ID of the same gene
updated 5.5 years ago by 87k • written 5.5 years ago by ▴ 260
0
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1
reply
1.4k
views
Comment: C: huge difference of expression value of different probes for the same gene. Why?
5.5 years ago by Raheleh ▴ 260
0
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0
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4.9k
views
Comment: C: Should the expression data be centered before PCA?
5.5 years ago by Raheleh ▴ 260
9
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20
replies
4.9k
views
Should the expression data be centered before PCA?
PCA Centering expression data
5.5 years ago by Raheleh ▴ 260
1
vote
1
reply
3.3k
views
how to use custom cdf in R to convert affyID to gene symbol?
affymetrix microarray custom cdf gene symbol
updated 5.7 years ago by 89k • written 8.2 years ago by ▴ 260
3
votes
4
replies
4.6k
views
Downstream analysis of VCF files obtained from VarScan2
WES VCF Somatic variations VarScan2 SnpEff
updated 5.9 years ago by ▴ 470 • written 6.2 years ago by ▴ 260
1
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1
reply
4.0k
views
Comment: C: Calling CNV using bcftools
6.0 years ago by Raheleh ▴ 260
2
votes
3
replies
4.0k
views
Calling CNV using bcftools
bcftools CNV vcf
updated 3.3 years ago by • 0 • written 6.0 years ago by ▴ 260
0
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1
reply
5.3k
views
Comment: C: Problem in converting vcf to maf using vcf2maf tools
6.0 years ago by Raheleh ▴ 260
0
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1
reply
5.3k
views
Comment: A: Problem in converting vcf to maf using vcf2maf tools
6.0 years ago by Raheleh ▴ 260
4
votes
9
replies
5.3k
views
Problem in converting vcf to maf using vcf2maf tools
vcf2maf GRCh38 varscan
6.0 years ago by Raheleh ▴ 260
0
votes
0
replies
5.3k
views
Comment: C: Problem in converting vcf to maf using vcf2maf tools
6.0 years ago by Raheleh ▴ 260
0
votes
1
reply
5.3k
views
Comment: C: Problem in converting vcf to maf using vcf2maf tools
6.0 years ago by Raheleh ▴ 260
2
votes
3
replies
1.5k
views
How to annotate Copy Number Variations (Output of VarScan2)
CNV VarScan annotation
updated 6.0 years ago by 165k • written 6.0 years ago by ▴ 260
0
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1
reply
104k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
6.0 years ago by Raheleh ▴ 260
2
votes
1
reply
3.4k
views
Problem in installing mclust package R
R mclust lgfortran
updated 6.1 years ago by 27k • written 6.1 years ago by ▴ 260
0
votes
2
replies
2.1k
views
Problem in using VarScan fpfilter
bam-readcount varscan fpfilter snp calling
updated 6.1 years ago by 20 • written 6.3 years ago by ▴ 260
0
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0
replies
8.8k
views
Comment: C: Problem in using picard.jar
6.2 years ago by Raheleh ▴ 260
0
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3
replies
8.8k
views
Comment: C: Problem in using picard.jar
updated 6.2 years ago by 47k • written 6.2 years ago by ▴ 260
0
votes
2
replies
8.8k
views
Comment: C: Problem in using picard.jar
updated 6.2 years ago by 47k • written 6.2 years ago by ▴ 260
8
votes
13
replies
8.8k
views
Problem in using picard.jar
picard
updated 6.2 years ago by 165k • written 6.2 years ago by ▴ 260
0
votes
1
reply
8.8k
views
Comment: C: Problem in using picard.jar
6.2 years ago by Raheleh ▴ 260
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