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Comment: C: How to fix minimap2 -> samtools sort error (samtools sort: truncated file. Abort
4.3 years ago by John Marshall 3.1k
2
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4.0k
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Answer: A: How can I get the uncompressed size of a BGZIP file ?
4.4 years ago by John Marshall 3.1k
6
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1
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4.5k
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Answer: A: How to filter out chromosome regions from a .bam file
4.5 years ago by John Marshall 3.1k
1
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0
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1.8k
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Comment: C: Bcftools filter error
4.6 years ago by John Marshall 3.1k
3
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0
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4.6k
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Answer: A: bedtools sort doesn't properly sort
4.6 years ago by John Marshall 3.1k
1
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0
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2.1k
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Comment: C: Does bai file contain chromosome names and their lengths?
4.7 years ago by John Marshall 3.1k
6
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2
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2.1k
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Answer: A: Does bai file contain chromosome names and their lengths?
4.7 years ago by John Marshall 3.1k
0
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1
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2.1k
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Comment: C: BWA mem paired end read name errors
4.8 years ago by John Marshall 3.1k
1
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0
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1.9k
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Comment: C: Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
4.8 years ago by John Marshall 3.1k
4
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1
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2.3k
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Answer: A: My snakefile won't run because of wildcards-please help!
5.0 years ago by John Marshall 3.1k
1
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0
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1.2k
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Comment: C: BAM file output
5.2 years ago by John Marshall 3.1k
2
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0
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3.2k
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Answer: A: How to properly measure the length of a reference genome
5.3 years ago by John Marshall 3.1k
3
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1
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2.3k
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Answer: A: bwa mem | samtools sort failing without any error messages
5.3 years ago by John Marshall 3.1k
0
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0
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4.6k
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Comment: C: samtools mpileup memory leakage
updated 5.3 years ago by 45k • written 9.3 years ago by 3.1k
2
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2
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4.6k
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Answer: A: samtools mpileup memory leakage
updated 5.3 years ago by 45k • written 9.3 years ago by 3.1k
1
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1
reply
2.7k
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Answer: A: [E::faidx_fetch_seq] error with Samtools mpileup?
5.4 years ago by John Marshall 3.1k
0
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0
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3.2k
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Comment: C: ERROR:SAM to BAM using samtools
5.4 years ago by John Marshall 3.1k
3
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2
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3.2k
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Answer: A: ERROR:SAM to BAM using samtools
5.4 years ago by John Marshall 3.1k
5
votes
1
reply
3.8k
views
Answer: A: Samtools mpileup of soft-clipped alignment behaves non-deterministically?
updated 5.4 years ago by 45k • written 9.4 years ago by 3.1k
1
vote
1
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7.8k
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Comment: C: Please help me with samtools
updated 5.4 years ago by 45k • written 9.5 years ago by 3.1k
2
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1
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7.8k
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Answer: A: Please help me with samtools
updated 5.4 years ago by 45k • written 9.5 years ago by 3.1k
4
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0
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3.2k
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Answer: A: SAMtools-1.2 sort options documentation
updated 5.5 years ago by 45k • written 9.6 years ago by 3.1k
2
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1
reply
4.0k
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Answer: A: suppress pysam index warnings.
5.5 years ago by John Marshall 3.1k
7
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1
reply
1.3k
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Answer: A: Alternate Tag Types for Picard
5.5 years ago by John Marshall 3.1k
0
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1
reply
4.0k
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Comment: C: Pb to Compile Pindel on MacOs x
updated 5.5 years ago by 45k • written 9.9 years ago by 3.1k
1
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1
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4.0k
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Answer: A: Pb to Compile Pindel on MacOs x
updated 5.5 years ago by 45k • written 9.9 years ago by 3.1k
0
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0
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2.9k
views
Comment: C: Samtools/htslib v1.2 released
updated 5.5 years ago by 45k • written 10.2 years ago by 3.1k
0
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1
reply
13k
views
Comment: C: Error Installing Samtools Library On Linux (Centos 6)
updated 5.6 years ago by 45k • written 11.6 years ago by 3.1k
6
votes
2
replies
10k
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Answer: A: Duplicate @Sq Lines In Sam File Header
updated 5.6 years ago by 45k • written 11.6 years ago by 3.1k
0
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0
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7.1k
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Comment: C: Samtools Api: Sequence And Quality Are Inconsistent
updated 5.6 years ago by 45k • written 11.9 years ago by 3.1k
3
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0
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9.6k
views
Answer: A: Samtools view Exec format error Help
5.6 years ago by John Marshall 3.1k
2
votes
1
reply
2.5k
views
Answer: A: Samtools view error when converting sam to bam file using sc-ATAC-seq data from
5.7 years ago by John Marshall 3.1k
2
votes
0
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26k
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Answer: A: Can You Please Tell Me Where I Find Information About .Fai File Format?
5.8 years ago by John Marshall 3.1k
1
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1
reply
3.1k
views
Answer: A: Parsing tabix with pysam
5.8 years ago by John Marshall 3.1k
1
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0
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3.1k
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Comment: C: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
5.8 years ago by John Marshall 3.1k
1
vote
0
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2.8k
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Answer: A: What are valid VCF symbolic alternate alleles for structural variants?
5.8 years ago by John Marshall 3.1k
1
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1
reply
3.1k
views
Comment: C: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
5.8 years ago by John Marshall 3.1k
6
votes
2
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3.1k
views
Answer: A: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
5.8 years ago by John Marshall 3.1k
1
vote
0
replies
3.1k
views
Answer: A: Having trouble with samtools cat
5.9 years ago by John Marshall 3.1k
1
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0
replies
1.3k
views
Comment: C: VCF INFO interpretation
5.9 years ago by John Marshall 3.1k
1
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1
reply
2.7k
views
Comment: C: how to compute the insert size in SAM file
6.0 years ago by John Marshall 3.1k
5
votes
0
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2.5k
views
Answer: A: How does bedtools bamtobed calculate end position
6.0 years ago by John Marshall 3.1k
12
votes
1
reply
66k
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Answer: A: Subsampling Bam File With Samtools
updated 6.1 years ago by 45k • written 11.8 years ago by 3.1k
2
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1
reply
4.0k
views
Answer: A: Bam file MC tag as integer
6.1 years ago by John Marshall 3.1k
1
vote
0
replies
1.2k
views
Answer: A: samtools " Assertion `iter->curr_off == iter->off[iter->i].v' failed". "
6.2 years ago by John Marshall 3.1k
0
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1
reply
5.6k
views
Comment: C: install Primer3 on Ubuntu
6.3 years ago by John Marshall 3.1k
1
vote
0
replies
5.6k
views
Comment: C: install Primer3 on Ubuntu
6.3 years ago by John Marshall 3.1k
1
vote
1
reply
5.3k
views
Comment: C: Review of the CIGAR string format
6.5 years ago by John Marshall 3.1k
0
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0
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3.3k
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Answer: A: How to use samtools tview goto with long reference sequence name
6.5 years ago by John Marshall 3.1k
1
vote
0
replies
2.8k
views
Answer: A: Xscore Installation Issue using Bash
6.5 years ago by John Marshall 3.1k
171 results • Page 2 of 4
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