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Comment: C: Galaxy Bowtie2 fastq recognition
7.3 years ago by rbronste ▴ 420
0
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5
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2.0k
views
Galaxy Bowtie2 fastq recognition
galaxy Bowtie2 fastq
7.3 years ago by rbronste ▴ 420
0
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1
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35k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.3 years ago by rbronste ▴ 420
0
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1
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35k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.3 years ago by rbronste ▴ 420
0
votes
1
reply
35k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.4 years ago by rbronste ▴ 420
0
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1
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35k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.4 years ago by rbronste ▴ 420
0
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0
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2.8k
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Comment: C: how to know the putative function of a gene
7.4 years ago by rbronste ▴ 420
0
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0
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9.4k
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Comment: C: Removing PCR duplicates - fastq or BAM?
7.4 years ago by rbronste ▴ 420
23
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9
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9.4k
views
Removing PCR duplicates - fastq or BAM?
alignment BAM fastq duplicates
updated 7.4 years ago by 102k • written 7.4 years ago by ▴ 420
0
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2
replies
35k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.4 years ago by rbronste ▴ 420
0
votes
1
reply
35k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.4 years ago by rbronste ▴ 420
0
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0
replies
3.4k
views
Comment: C: Samtools flagstat unpaired reads
7.4 years ago by rbronste ▴ 420
1
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3
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3.4k
views
Samtools flagstat unpaired reads
samtools BAM Bowtie2
updated 7.4 years ago by 164k • written 7.4 years ago by ▴ 420
2
votes
2
replies
4.9k
views
Duplicates in ATAC-seq data
ATAC-seq picard samtools rmdup duplicates
updated 7.4 years ago by ★ 3.5k • written 7.4 years ago by ▴ 420
0
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2
replies
2.3k
views
Bowtie2 parallelization on cluster
Bowtie2 alignment
updated 7.4 years ago by ▴ 120 • written 7.4 years ago by ▴ 420
0
votes
1
reply
17k
views
Trouble installing R package Cairo
R Cairo
updated 7.4 years ago by ▴ 330 • written 7.4 years ago by ▴ 420
0
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1
reply
3.5k
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Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
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1
reply
3.5k
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Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
votes
1
reply
3.5k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
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0
replies
3.5k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
votes
1
reply
3.5k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
votes
0
replies
3.5k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
votes
1
reply
3.5k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
0
votes
1
reply
3.5k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by rbronste ▴ 420
4
votes
21
replies
3.5k
views
Closest gene to set of intervals
bedops bedtools
updated 7.4 years ago by ★ 1.5k • written 7.4 years ago by ▴ 420
4
votes
1
reply
2.3k
views
deepTools - plotHeatmap, move colorbar to the bottom
deepTools heatmap
updated 7.4 years ago by 104k • written 7.4 years ago by ▴ 420
0
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0
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5.1k
views
Comment: C: converting bed file to heatmap data
7.5 years ago by rbronste ▴ 420
0
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0
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5.1k
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Comment: C: converting bed file to heatmap data
7.5 years ago by rbronste ▴ 420
0
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1
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9.6k
views
Comment: C: Quickly Plotting Distribution Of Points From Bed File?
7.5 years ago by rbronste ▴ 420
0
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1
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9.6k
views
Comment: C: Quickly Plotting Distribution Of Points From Bed File?
7.5 years ago by rbronste ▴ 420
0
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3
replies
1.2k
views
Table Browser refGene identifiers question
Table Browser UCSC
updated 7.5 years ago by 164k • written 7.5 years ago by ▴ 420
0
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0
replies
1.2k
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Comment: C: Table Browser refGene identifiers question
7.5 years ago by rbronste ▴ 420
0
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1
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7.1k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.5 years ago by rbronste ▴ 420
0
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1
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1.7k
views
Comment: C: Chromatin Accessibility Data and RNA-seq
7.5 years ago by rbronste ▴ 420
4
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4
replies
1.7k
views
Chromatin Accessibility Data and RNA-seq
RNA-Seq chromatin accessibility
updated 7.5 years ago by 13k • written 7.5 years ago by ▴ 420
1
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2
replies
1.3k
views
Peak ident near highly expressed genes
ChIP-Seq RNA-Seq bedops
7.5 years ago by rbronste ▴ 420
0
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0
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1.3k
views
Normalizing CENTIPEDE footprint plots
centipede ATAC-seq footprinting ChIP-Seq R
updated 7.5 years ago by 20 • written 7.7 years ago by ▴ 420
0
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1
reply
3.1k
views
Comment: C: Calculating FPKM values from HT-counts
7.5 years ago by rbronste ▴ 420
0
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1
reply
3.4k
views
Comment: C: Getting avg gene length from GTF (for all splice isoforms)
7.5 years ago by rbronste ▴ 420
0
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1
reply
3.4k
views
Comment: C: Getting avg gene length from GTF (for all splice isoforms)
7.5 years ago by rbronste ▴ 420
0
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1
reply
3.4k
views
Comment: C: Getting avg gene length from GTF (for all splice isoforms)
7.5 years ago by rbronste ▴ 420
2
votes
8
replies
3.4k
views
Getting avg gene length from GTF (for all splice isoforms)
RNA-Seq UCSC table browser GTF
updated 7.5 years ago by 36k • written 7.5 years ago by ▴ 420
0
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1
reply
3.1k
views
Comment: C: Calculating FPKM values from HT-counts
7.5 years ago by rbronste ▴ 420
0
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1
reply
3.1k
views
Comment: C: Calculating FPKM values from HT-counts
7.5 years ago by rbronste ▴ 420
0
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1
reply
1.9k
views
Comment: C: Setting up a lab wiki
7.5 years ago by rbronste ▴ 420
10
votes
6
replies
1.9k
views
Setting up a lab wiki
wiki data analysis and organization
updated 7.6 years ago by 27k • written 7.6 years ago by ▴ 420
2
votes
9
replies
3.1k
views
Calculating FPKM values from HT-counts
FPKM RPKM RNA-Seq
updated 7.6 years ago by 104k • written 7.6 years ago by ▴ 420
0
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1
reply
2.7k
views
Comment: C: bedops wig2bed issue
updated 7.6 years ago by 147k • written 7.6 years ago by ▴ 420
0
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1
reply
2.7k
views
Comment: C: bedops wig2bed issue
7.6 years ago by rbronste ▴ 420
0
votes
5
replies
2.7k
views
bedops wig2bed issue
bedops wig2bed
7.6 years ago by rbronste ▴ 420
294 results • Page 5 of 6
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