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Comment: C: Pilon and BBMap generate VCf file where are chromosome names seem to be absent,
7.8 years ago by human_genomeXXX ▴ 10
0
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2.1k
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Comment: C: Pilon and BBMap generate VCf file where are chromosome names seem to be absent,
7.8 years ago by human_genomeXXX ▴ 10
3
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11
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2.1k
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Pilon and BBMap generate VCf file where are chromosome names seem to be absent, how to fix that?
pilon bbmap annotation vcf
7.8 years ago by human_genomeXXX ▴ 10
0
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2.7k
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Comment: C: How to preprocess, normalize, decompose a VCF file before inputting to the SNPEf
7.8 years ago by human_genomeXXX ▴ 10
0
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3
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2.7k
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How to preprocess, normalize, decompose a VCF file before inputting to the SNPEff?
vcf snpeff
7.8 years ago by human_genomeXXX ▴ 10
0
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0
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2.5k
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Comment: C: How to reduce annotation errors using SNPEff on BBMap`s and Pilon`s VCFs?
7.8 years ago by human_genomeXXX ▴ 10
0
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0
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2.5k
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Comment: C: How to reduce annotation errors using SNPEff on BBMap`s and Pilon`s VCFs?
7.8 years ago by human_genomeXXX ▴ 10
0
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1
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2.3k
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Comment: C: How to use R`s Short read package to get a quality report on a set of paired fas
7.8 years ago by human_genomeXXX ▴ 10
0
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0
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1.6k
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Is it correct to try to use the newest ClinEff annotation software for the tuberculosis genome?
snpeff clineff annotation
7.8 years ago by human_genomeXXX ▴ 10
2
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4
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2.3k
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How to use R`s Short read package to get a quality report on a set of paired fastq files?
R fastqc short read
7.8 years ago by human_genomeXXX ▴ 10
0
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1
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3.3k
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Comment: C: How to call variants using BBMap, if possible with charts and graphics?
7.8 years ago by human_genomeXXX ▴ 10
0
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4
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2.5k
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How to reduce annotation errors using SNPEff on BBMap`s and Pilon`s VCFs?
snpeff vcf bbmap pilon
7.8 years ago by human_genomeXXX ▴ 10
4
votes
9
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3.3k
views
How to call variants using BBMap, if possible with charts and graphics?
bbmap variant calling
updated 7.8 years ago by 20k • written 7.8 years ago by ▴ 10
1
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1
reply
1.6k
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What R packages and Python/java/ruby libraries are in use today for microarray`s ttest, ANOVA and clustering?
microarray
updated 7.8 years ago by 47k • written 7.8 years ago by ▴ 10
0
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1
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3.0k
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Comment: C: What software can better substitute SNPEff for the tuberculosis whole genome ann
7.8 years ago by human_genomeXXX ▴ 10
0
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1
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2.5k
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Comment: C: How to to run GATK variant call on the .bam or .sam and reference in a minimal l
7.8 years ago by human_genomeXXX ▴ 10
0
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0
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2.5k
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Comment: C: How to to run GATK variant call on the .bam or .sam and reference in a minimal l
7.8 years ago by human_genomeXXX ▴ 10
0
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3
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2.5k
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Comment: C: How to to run GATK variant call on the .bam or .sam and reference in a minimal l
7.8 years ago by human_genomeXXX ▴ 10
0
votes
0
replies
2.5k
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Comment: C: How to to run GATK variant call on the .bam or .sam and reference in a minimal l
7.8 years ago by human_genomeXXX ▴ 10
0
votes
1
reply
2.5k
views
Comment: C: How to to run GATK variant call on the .bam or .sam and reference in a minimal l
7.8 years ago by human_genomeXXX ▴ 10
3
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13
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2.5k
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How to to run GATK variant call on the .bam or .sam and reference in a minimal lines of code?
gatk vcf
7.8 years ago by human_genomeXXX ▴ 10
3
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2
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2.0k
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What parameters to set in SNPEff to improve annotation results from the Pilon VCF input to SNPEff?
snpeff annotation pilon vcf
7.8 years ago by human_genomeXXX ▴ 10
1
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4
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3.0k
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What software can better substitute SNPEff for the tuberculosis whole genome annotation?
annotation whole genome tuberculosis
7.8 years ago by human_genomeXXX ▴ 10
0
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1
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1.9k
views
How to download and set up a Tuberculosis H37rv whole genome in SNPEff software?
snpeff
updated 7.8 years ago by 147k • written 7.8 years ago by ▴ 10
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