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Comment: C: Interpretation problem at PCA plot for detecting batch effect
5.2 years ago by modarzi ▴ 170
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1.6k
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Interpretation problem at PCA plot for detecting batch effect
PCA RNA-Seq batch-effect
updated 10 months ago by 44k • written 5.2 years ago by ▴ 170
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6.1k
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Comment: C: TCGA barcode documentation? TCGA wiki?
5.2 years ago by modarzi ▴ 170
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2
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6.1k
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Comment: C: TCGA barcode documentation? TCGA wiki?
5.2 years ago by modarzi ▴ 170
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8.0k
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Comment: C: Batch ID in TCGA database
5.2 years ago by modarzi ▴ 170
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1
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4.7k
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Comment: C: what kind of data can be directly WGCNA?
5.2 years ago by modarzi ▴ 170
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1
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4.7k
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Comment: C: what kind of data can be directly WGCNA?
5.2 years ago by modarzi ▴ 170
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1.4k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.2 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.2 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.3 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: problem for Collapsing Probes For Same Gene in microarray gene expression data
5.3 years ago by modarzi ▴ 170
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8
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1.4k
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problem for Collapsing Probes For Same Gene in microarray gene expression data
aggregate Microarray Collapsing Probes
5.3 years ago by modarzi ▴ 170
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1
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5.4k
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Comment: C: what does negative value mean in gene expression profile?
5.3 years ago by modarzi ▴ 170
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1
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3.6k
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Comment: C: How to deal with the NAs in WGCNA trait file?
5.3 years ago by modarzi ▴ 170
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1
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2.9k
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Comment: C: how to measure silhouette coefficient and Dunn index for Hierarchical Clustering
5.3 years ago by modarzi ▴ 170
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1
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1.2k
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Comment: C: Regarding WGCNA gene expression data
5.3 years ago by modarzi ▴ 170
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1
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1.2k
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Comment: C: Regarding WGCNA gene expression data
5.3 years ago by modarzi ▴ 170
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3
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2.9k
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how to measure silhouette coefficient and Dunn index for Hierarchical Clustering in WGCNA?
silhouette coefficient WGCNA
5.3 years ago by modarzi ▴ 170
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0
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1.1k
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problem for merging 2 pairs of reads by "SeqPrep" tool
seqprep rna-seq
5.3 years ago by modarzi ▴ 170
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1
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5.4k
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Comment: C: what does negative value mean in gene expression profile?
5.3 years ago by modarzi ▴ 170
1
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5
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5.4k
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what does negative value mean in gene expression profile?
RNA-Seq gene expression
5.3 years ago by modarzi ▴ 170
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1
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2.4k
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Comment: C: constructing network by WGCNA and validation Hub genes
5.3 years ago by modarzi ▴ 170
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1
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2.4k
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Comment: C: constructing network by WGCNA and validation Hub genes
5.3 years ago by modarzi ▴ 170
1
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5
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2.4k
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constructing network by WGCNA and validation Hub genes
Network Construction WGCNA hub genes
5.3 years ago by modarzi ▴ 170
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1
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8.1k
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Comment: C: Exporting WGCNA step-to-step network construction objects into igraph object
5.4 years ago by modarzi ▴ 170
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5
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8.1k
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Exporting WGCNA step-to-step network construction objects into igraph object
WGCNA igraph
updated 3.2 years ago by • 0 • written 5.4 years ago by ▴ 170
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0
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1.5k
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finding Topological Overlap Matrix(TOMType) value in TOMsimilarity() function in WGCNA
WGCNA TOM
updated 5.4 years ago by 20 • written 5.6 years ago by ▴ 170
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0
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1.5k
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Comment: C: DASHR 2.0: integrated database of human small non-coding RNA genes and mature pr
5.5 years ago by modarzi ▴ 170
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1
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787
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Problem for downloading Non-coding RNA from Gene Expression Omnibus (GEO)
Non-coding RNA GEO
5.6 years ago by modarzi ▴ 170
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1
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1.2k
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Comment: C: how to filter genes in significant module?
5.6 years ago by modarzi ▴ 170
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3
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1.2k
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how to filter genes in significant module?
wgcna significant modules
5.6 years ago by modarzi ▴ 170
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1
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43k
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Comment: C: Survival analysis with gene expression
5.7 years ago by modarzi ▴ 170
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1
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43k
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Comment: A: Survival analysis with gene expression
5.7 years ago by modarzi ▴ 170
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1
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6.7k
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Comment: C: How to find p-value of the modules in WGCNA?
5.7 years ago by modarzi ▴ 170
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6.7k
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Comment: C: How to find p-value of the modules in WGCNA?
5.7 years ago by modarzi ▴ 170
0
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1
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43k
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Comment: C: Survival analysis with gene expression
5.7 years ago by modarzi ▴ 170
0
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1
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43k
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Comment: C: Survival analysis with gene expression
5.7 years ago by modarzi ▴ 170
0
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0
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1.4k
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how to match Ref. and Test data set genes for module preservation based on WGCNA?
WGCNA module preservation
5.8 years ago by modarzi ▴ 170
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1
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1.4k
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Comment: C: Problem for reading annotation file for GPL10999_family.soft
5.9 years ago by modarzi ▴ 170
2
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4
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1.4k
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Problem for reading annotation file for GPL10999_family.soft
annotation
5.9 years ago by modarzi ▴ 170
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1
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1.2k
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Comment: C: problem for 2 different normalization methods in train and test data set
5.9 years ago by modarzi ▴ 170
3
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3
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1.2k
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problem for 2 different normalization methods in train and test data set
RNA-Seq FPKM-UQ TPM
updated 5.9 years ago by 8.3k • written 5.9 years ago by ▴ 170
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1
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43k
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Comment: C: Survival analysis with gene expression
6.0 years ago by modarzi ▴ 170
0
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1
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43k
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Comment: C: Survival analysis with gene expression
6.0 years ago by modarzi ▴ 170
0
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1
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43k
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Comment: C: Survival analysis with gene expression
6.1 years ago by modarzi ▴ 170
0
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1
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43k
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Comment: C: Survival analysis with gene expression
6.1 years ago by modarzi ▴ 170
0
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1
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43k
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Comment: C: Survival analysis with gene expression
6.1 years ago by modarzi ▴ 170
0
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0
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11k
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Comment: C: How filter genes to construct co-expression network?
6.2 years ago by modarzi ▴ 170
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0
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2.4k
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Comment: C: problem for gene survival analysis through "Survival" package in R
6.2 years ago by modarzi ▴ 170
0
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1
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2.4k
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Comment: C: problem for gene survival analysis through "Survival" package in R
6.2 years ago by modarzi ▴ 170
178 results • Page 2 of 4
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