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What reference to be used in snippy
snippy SNP
updated 2.8 years ago by ▴ 40 • written 3.8 years ago by ▴ 190
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0
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3.7k
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Comment: C: Replace fasta Header witha a matching text
3.7 years ago by Optimist ▴ 190
4
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5
replies
3.7k
views
Replace fasta Header witha a matching text
awk seqkit grep
updated 3.7 years ago by 147k • written 3.7 years ago by ▴ 190
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0
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3.7k
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Comment: C: Replace fasta Header witha a matching text
3.7 years ago by Optimist ▴ 190
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0
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23k
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Comment: C: Renaming fasta headers according to a matching name list
3.7 years ago by Optimist ▴ 190
0
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1
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23k
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Comment: A: Renaming fasta headers according to a matching name list
updated 3.7 years ago by 147k • written 3.7 years ago by ▴ 190
0
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0
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827
views
Combine multiple CARD RGI outputs
CARD RGI
3.8 years ago by Optimist ▴ 190
0
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1
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2.8k
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Comment: C: How to extract fasta headers that contains specific text and it's sequence
3.8 years ago by Optimist ▴ 190
2
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1
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2.8k
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Answer: C: How to extract fasta headers that contains specific text and it's sequence
updated 3.8 years ago by 44k • written 3.8 years ago by ▴ 190
7
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12
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2.8k
views
How to extract fasta headers that contains specific text and it's sequence
barrnap 16srRNA fasta
written 3.8 years ago by ▴ 190
0
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1
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2.8k
views
Comment: C: How to extract fasta headers that contains specific text and it's sequence
3.8 years ago by Optimist ▴ 190
0
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0
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2.8k
views
Comment: C: How to extract fasta headers that contains specific text and it's sequence
3.8 years ago by Optimist ▴ 190
0
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1
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1.3k
views
Comment: C: What is the best way to assemble Illumina paired end reads?
3.9 years ago by Optimist ▴ 190
0
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0
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1.3k
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Comment: C: What is the best way to assemble Illumina paired end reads?
3.9 years ago by Optimist ▴ 190
3
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5
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1.3k
views
What is the best way to assemble Illumina paired end reads?
Illumina sequencing Assembly
3.9 years ago by Optimist ▴ 190
0
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0
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2.9k
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Comment: A: NCBI PGAP yami file
3.9 years ago by Optimist ▴ 190
2
votes
0
replies
588
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Characterization of an Integron carrying antimicrobial resistance genes
integron Genomic Island Transposon
updated 3.6 years ago by • 0 • written 4.0 years ago by ▴ 190
0
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1
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4.8k
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Comment: C: Prokka Annotation or NCBI Annotation
4.0 years ago by Optimist ▴ 190
1
vote
0
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937
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Answer: A: Selection of Multiple Sequence Alignment Tool
4.0 years ago by Optimist ▴ 190
0
votes
1
reply
803
views
Should we remove plasmid sequences for Whole genome Alignment
plasmids genome alignment
4.0 years ago by Optimist ▴ 190
0
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1
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4.8k
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Comment: C: Prokka Annotation or NCBI Annotation
4.0 years ago by Optimist ▴ 190
5
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6
replies
4.8k
views
Prokka Annotation or NCBI Annotation
Prokka NCBI GenBank
updated 3.1 years ago by • 0 • written 4.0 years ago by ▴ 190
0
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0
replies
817
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Tools for Whole genome phylogeny
Phyogeny Bacterial Genomics
4.1 years ago by Optimist ▴ 190
0
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0
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732
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Comment: C: extract a DNA sequence based on header in multifasta file
4.1 years ago by Optimist ▴ 190
1
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2
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732
views
extract a DNA sequence based on header in multifasta file
fasta sequence extraction
updated 4.1 years ago by 8.7k • written 4.1 years ago by ▴ 190
0
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1
reply
1.1k
views
How to generate WGS Multiple sequence alignment file
Multiple-Sequence-Alignment
updated 18 months ago by 44k • written 4.1 years ago by ▴ 190
6
votes
4
replies
2.0k
views
How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
NCBI Genome-Assembly
updated 20 months ago by 44k • written 4.1 years ago by ▴ 190
0
votes
0
replies
1.2k
views
Error creating a new environment in Bioconda
Bioconda
4.1 years ago by Optimist ▴ 190
1
vote
1
reply
988
views
Error install Phame using Bioconda
conda Phame Install
4.1 years ago by Optimist ▴ 190
0
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1
reply
1.1k
views
Should we Ignore heterozygous SNPs while constructing SNP based phylogeny
SNP Phylogeny CSIPhylogent
updated 4.1 years ago by 20 • written 4.2 years ago by ▴ 190
3
votes
2
replies
1.4k
views
Hybrid Assembly From Illumina and Ion Torrent Reads
Iontorrent Illumina Genome assembly
updated 4.2 years ago by ▴ 530 • written 4.2 years ago by ▴ 190
0
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0
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1.4k
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Comment: C: Hybrid Assembly From Illumina and Ion Torrent Reads
4.2 years ago by Optimist ▴ 190
7
votes
8
replies
6.3k
views
SNP Analysis of bacterial genomes
SNP Genomics Bacteria
updated 4.4 years ago by 20 • written 7.0 years ago by ▴ 190
2
votes
6
replies
1.3k
views
What tool should I use for the identification of DNA transposons?
transposons bacterial genome transposase
updated 4.6 years ago by 5.9k • written 4.6 years ago by ▴ 190
0
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1
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1.3k
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Comment: C: What tool should I use for the identification of DNA transposons?
4.6 years ago by Optimist ▴ 190
2
votes
6
replies
1.2k
views
Tools to generate Genetic Context in Bacterial Genomes
synteny plot genomic context
updated 4.9 years ago by 21k • written 5.0 years ago by ▴ 190
0
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0
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1.2k
views
Comment: C: Tools to generate Genetic Context in Bacterial Genomes
4.9 years ago by Optimist ▴ 190
1
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1
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1.8k
views
Answer: A: How to download fasta files of a particular genus bacteria available in NCBI?
updated 4.9 years ago by 101k • written 4.9 years ago by ▴ 190
0
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0
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1.2k
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Comment: A: Unable to Visualize RGI results using JSON file upload
4.9 years ago by Optimist ▴ 190
0
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1
reply
1.2k
views
Comment: C: Tools to generate Genetic Context in Bacterial Genomes
5.0 years ago by Optimist ▴ 190
0
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0
replies
1.5k
views
Comment: C: High CDS Count in my assembled Genome using Nanopore reads (ONT) data
5.3 years ago by Optimist ▴ 190
4
votes
4
replies
1.5k
views
High CDS Count in my assembled Genome using Nanopore reads (ONT) data
High CDS WGS Nanopore Assembly
updated 5.3 years ago by 35k • written 5.3 years ago by ▴ 190
6
votes
4
replies
1.4k
views
Download All The Bacterial Genomes of Pseudomonas aeruginosa From Ncbi
wgs ngs bacterial Genomics
updated 5.5 years ago by 21k • written 5.5 years ago by ▴ 190
3
votes
1
reply
751
views
Country wise list of bacterial genome sequences
Bacterial genome wgs ngs
updated 5.5 years ago by 147k • written 5.5 years ago by ▴ 190
0
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1
reply
1.4k
views
SPAdes usge commandline
Assembly genome ion torrent
5.8 years ago by Optimist ▴ 190
2
votes
1
reply
1.7k
views
Has anyone used MeDuSa: a multi-draft based scaffolder
wgs Bacterial genomics ngs medusa
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 190
0
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1
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1.3k
views
Comment: C: Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
5.8 years ago by Optimist ▴ 190
3
votes
3
replies
1.3k
views
Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
Assembly Plasmid WGS Ion torrent
updated 5.8 years ago by 11k • written 5.8 years ago by ▴ 190
0
votes
0
replies
4.3k
views
Comment: C: How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a
6.3 years ago by Optimist ▴ 190
0
votes
0
replies
4.3k
views
Comment: C: How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a
6.3 years ago by Optimist ▴ 190
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