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Comment: Comment: VEP filtering query
10 months ago by prasundutta87 ▴ 670
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883
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Comment: Comment: VEP filtering query
10 months ago by prasundutta87 ▴ 670
2
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4
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883
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VEP filtering query
ensembl-vep
10 months ago by prasundutta87 ▴ 670
0
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1
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2.9k
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Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
15 months ago by prasundutta87 ▴ 670
1
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0
replies
1.6k
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Comment: Comment: Coverage histogram query
15 months ago by prasundutta87 ▴ 670
0
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1
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1.6k
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Comment: Comment: Coverage histogram query
15 months ago by prasundutta87 ▴ 670
0
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1
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1.6k
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Comment: Comment: Coverage histogram query
15 months ago by prasundutta87 ▴ 670
0
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0
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1.6k
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Comment: Comment: Coverage histogram query
15 months ago by prasundutta87 ▴ 670
0
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1
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1.6k
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Comment: Comment: Coverage histogram query
15 months ago by prasundutta87 ▴ 670
1
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10
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1.6k
views
Coverage histogram query
Alignment
15 months ago by prasundutta87 ▴ 670
0
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1
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855
views
Comment: Comment: I need help with a methyl array data analysis
18 months ago by prasundutta87 ▴ 670
0
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0
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749
views
Comment: Comment: best practice to choose AF threshold based on population number
20 months ago by prasundutta87 ▴ 670
0
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2
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749
views
best practice to choose AF threshold based on population number
VCF AF allele-frequency
20 months ago by prasundutta87 ▴ 670
0
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0
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1.0k
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Comment: Comment: Very high coverage Nanopore alignment Hg38
20 months ago by prasundutta87 ▴ 670
0
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0
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1.2k
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Comment: Comment: VCF file filter for breakpoints
20 months ago by prasundutta87 ▴ 670
1
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1
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1.2k
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Comment: Comment: VCF file filter for breakpoints
20 months ago by prasundutta87 ▴ 670
0
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0
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1.3k
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
20 months ago by prasundutta87 ▴ 670
0
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0
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396
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snpeff annotation query
snpeff structural-variation VCF
updated 20 months ago by 44k • written 20 months ago by ▴ 670
0
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0
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1.2k
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Comment: Comment: alternate allele frequency and minor allele frequency
2.1 years ago by prasundutta87 ▴ 670
0
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2
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1.2k
views
alternate allele frequency and minor allele frequency
rare common SNV SV VCF
2.1 years ago by prasundutta87 ▴ 670
0
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0
replies
1.1k
views
Answer: Answer: How to parse the output file of snpEFF
2.2 years ago by prasundutta87 ▴ 670
2
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0
replies
12k
views
Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
2.3 years ago by prasundutta87 ▴ 670
1
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2
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12k
views
Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
2.3 years ago by prasundutta87 ▴ 670
4
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11
replies
12k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF snp
2.3 years ago by prasundutta87 ▴ 670
0
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0
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373
views
Tool for mode of inheritance based filtering for structural variants
StructuralVariants genotypes SNVs trio modeOfInheritance
2.6 years ago by prasundutta87 ▴ 670
0
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1
reply
1.3k
views
Comment: Comment: How to run fastqc for 500 raw sequence reads (100 single end and 400 paired end
2.7 years ago by prasundutta87 ▴ 670
0
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0
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4.6k
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Comment: Comment: RNA Seq data network analysis
2.8 years ago by prasundutta87 ▴ 670
2
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2
replies
3.2k
views
EPIC methylation manifest GRch38 query
methylation coordinates EPIC bedgraph CpG
updated 2.8 years ago by ▴ 10 • written 4.4 years ago by ▴ 670
0
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0
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483
views
query on filtering/dropping samples based on total reads (yield)
paired-end fastq Illumina
3.0 years ago by prasundutta87 ▴ 670
0
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0
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1.7k
views
Comment: Comment: EPIC array data - How to find the total number of genes in the array?
3.0 years ago by prasundutta87 ▴ 670
0
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1
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1.7k
views
Answer: Answer: EPIC array data - How to find the total number of genes in the array?
3.0 years ago by prasundutta87 ▴ 670
0
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0
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2.3k
views
Comment: Comment: Variant annotation using VEP
3.0 years ago by prasundutta87 ▴ 670
0
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1
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2.3k
views
Comment: Comment: Variant annotation using VEP
3.1 years ago by prasundutta87 ▴ 670
0
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1
reply
2.3k
views
Comment: Comment: Variant annotation using VEP
3.1 years ago by prasundutta87 ▴ 670
0
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1
reply
2.3k
views
Comment: Comment: Variant annotation using VEP
3.1 years ago by prasundutta87 ▴ 670
0
votes
1
reply
2.3k
views
Answer: Answer: Variant annotation using VEP
3.1 years ago by prasundutta87 ▴ 670
0
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0
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686
views
Answer: Answer: calculation of gene coverage
3.1 years ago by prasundutta87 ▴ 670
0
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1
reply
656
views
Structural variation nomenclature ambiguity
Structural_Variation
updated 3.2 years ago by ▴ 580 • written 3.2 years ago by ▴ 670
0
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0
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1.3k
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Comment: Comment: Annotate Structural variants with population specific allele frequency values
3.2 years ago by prasundutta87 ▴ 670
0
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2
replies
1.3k
views
Annotate Structural variants with population specific allele frequency values
allele Structural_variation VEP frequency VCF
3.2 years ago by prasundutta87 ▴ 670
1
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1
reply
2.6k
views
Answer: Answer: Extract CDS from maker gff
3.4 years ago by prasundutta87 ▴ 670
0
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0
replies
1.6k
views
Comment: Comment: VEP chromosome name query
3.4 years ago by prasundutta87 ▴ 670
3
votes
6
replies
1.6k
views
VEP chromosome name query
ensembl VCF annotation VEP
3.4 years ago by prasundutta87 ▴ 670
0
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0
replies
1.6k
views
Comment: Comment: VEP chromosome name query
3.4 years ago by prasundutta87 ▴ 670
0
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1
reply
1.6k
views
Comment: Comment: VEP chromosome name query
3.4 years ago by prasundutta87 ▴ 670
1
vote
0
replies
756
views
Comment: Comment: How to calculate the *necessary* sequencing depth for a SNP
3.5 years ago by prasundutta87 ▴ 670
0
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0
replies
581
views
About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 13 months ago by 44k • written 3.5 years ago by ▴ 670
0
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1
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2.0k
views
Comment: Comment: Core Dumped - STAR mapping
3.5 years ago by prasundutta87 ▴ 670
1
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1
reply
1.6k
views
Comment: Comment: Masking sites in a vcf file
3.5 years ago by prasundutta87 ▴ 670
0
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1
reply
2.0k
views
Comment: Comment: Core Dumped - STAR mapping
3.5 years ago by prasundutta87 ▴ 670
260 results • Page 1 of 6
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