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Comment: Comment: Flagstats and multiqc
3.5 years ago by prasundutta87 ▴ 670
1
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1
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3.1k
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Comment: Comment: how to get iDs in VCF file?
3.5 years ago by prasundutta87 ▴ 670
4
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0
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1.7k
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Answer: Answer: Given my background, what are my chances of being accepted into a PhD program at
3.5 years ago by prasundutta87 ▴ 670
1
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1
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951
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Answer: Answer: How can a mapping be performed without alignment?
3.5 years ago by prasundutta87 ▴ 670
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0
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1.2k
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Comment: Comment: Mutation hunting in 100 exome samples
3.5 years ago by prasundutta87 ▴ 670
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0
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3.1k
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Comment: Comment: Comparing two variant files
3.5 years ago by prasundutta87 ▴ 670
0
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0
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3.1k
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Comment: Comment: Comparing two variant files
3.5 years ago by prasundutta87 ▴ 670
0
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1
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3.1k
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Comment: Comment: Comparing two variant files
3.5 years ago by prasundutta87 ▴ 670
1
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1
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2.5k
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Comment: Comment: How do I filter a multi-individual BCF file for genotype probabilities
3.5 years ago by prasundutta87 ▴ 670
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0
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5.4k
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Comment: Comment: how to use the samtools filtering expression ?
3.5 years ago by prasundutta87 ▴ 670
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2
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5.4k
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Comment: Comment: how to use the samtools filtering expression ?
3.5 years ago by prasundutta87 ▴ 670
0
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0
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2.2k
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Comment: Comment: Allele Specific Expression (ASE) from RNA seq data
3.6 years ago by prasundutta87 ▴ 670
0
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1
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2.2k
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Comment: Comment: Allele Specific Expression (ASE) from RNA seq data
3.6 years ago by prasundutta87 ▴ 670
1
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0
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1.0k
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Answer: Answer: PCA plot making
3.6 years ago by prasundutta87 ▴ 670
0
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0
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1.9k
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Comment: Comment: remove unmapped reads on a specific chromosome only
3.6 years ago by prasundutta87 ▴ 670
0
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1
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1.9k
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Answer: Answer: remove unmapped reads on a specific chromosome only
3.6 years ago by prasundutta87 ▴ 670
0
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0
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1.5k
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Comment: Comment: Finding transcriptome coverage of genome
3.6 years ago by prasundutta87 ▴ 670
0
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0
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1.0k
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Comment: Comment: Multiple Transctipr ID (NM ) from MyVariantInfo
3.6 years ago by prasundutta87 ▴ 670
2
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1
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1.5k
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Comment: Comment: TiTv ratio
3.6 years ago by prasundutta87 ▴ 670
2
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0
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1.6k
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Comment: Comment: Picard and GaTK HaplotypeCaller
3.6 years ago by prasundutta87 ▴ 670
1
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0
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2.5k
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Answer: A: Read VEP output from command line in R
3.7 years ago by prasundutta87 ▴ 670
0
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0
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872
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Comment: C: How to keep the individual read depth with bcftools call?
3.7 years ago by prasundutta87 ▴ 670
0
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1
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8.3k
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Comment: C: how to remove duplicates with picard
3.7 years ago by prasundutta87 ▴ 670
0
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0
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12k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.8 years ago by prasundutta87 ▴ 670
0
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0
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12k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.8 years ago by prasundutta87 ▴ 670
0
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1
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12k
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Comment: C: Correct way to calculate VAF (Variant allele fraction) from a VCF file
3.8 years ago by prasundutta87 ▴ 670
0
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0
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2.9k
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Comment: C: GATK tool to merge INDEL with SNPs with the same set of samples
3.8 years ago by prasundutta87 ▴ 670
0
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1
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1.8k
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Comment: C: bcftools norm resulting in '*' in alternate allele
3.8 years ago by prasundutta87 ▴ 670
3
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3
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1.8k
views
bcftools norm resulting in '*' in alternate allele
SNP bcftools VCF exome
updated 3 months ago by ▴ 210 • written 3.8 years ago by ▴ 670
1
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1
reply
1.5k
views
Using GRch38 (human genome) primary assembly for mapping long reads
assembly alignment
updated 3.8 years ago by 7.0k • written 3.8 years ago by ▴ 670
1
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0
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1.1k
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Answer: A: Human Exome Variant Reference
3.8 years ago by prasundutta87 ▴ 670
0
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0
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493
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number of reads outside exonic regions in an exome sequencing experiment
exome next-gen sequencing
3.8 years ago by prasundutta87 ▴ 670
0
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1
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4.0k
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Comment: C: Determine the sex of a sample from a .vcf
3.8 years ago by prasundutta87 ▴ 670
2
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1
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4.0k
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Answer: A: Determine the sex of a sample from a .vcf
3.8 years ago by prasundutta87 ▴ 670
0
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0
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977
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Using 1000 genomes phase 3 variants for BQSR
SNP next-gen snp GATK
3.8 years ago by prasundutta87 ▴ 670
0
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0
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982
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Comment: C: Annotating variants using latest version fof the genome
4.1 years ago by prasundutta87 ▴ 670
0
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1
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982
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Comment: C: Annotating variants using latest version fof the genome
4.1 years ago by prasundutta87 ▴ 670
4
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5
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982
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Annotating variants using latest version fof the genome
SNP snp VCF
4.1 years ago by prasundutta87 ▴ 670
1
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0
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2.7k
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Comment: C: Identifying Private SNPs between multi sample vcf files.
4.3 years ago by prasundutta87 ▴ 670
1
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1
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1.3k
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rare SNP or SNV
snp snv
4.3 years ago by prasundutta87 ▴ 670
0
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0
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778
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find tabix version
tabix software VCF
4.3 years ago by prasundutta87 ▴ 670
0
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1
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1.1k
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Comment: C: methylation % calculation for targeted region
4.4 years ago by prasundutta87 ▴ 670
0
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0
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1.1k
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Comment: C: methylation % calculation for targeted region
4.4 years ago by prasundutta87 ▴ 670
0
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4
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1.1k
views
methylation % calculation for targeted region
methylation
4.4 years ago by prasundutta87 ▴ 670
0
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0
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3.2k
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Comment: C: EPIC methylation manifest GRch38 query
4.4 years ago by prasundutta87 ▴ 670
0
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1
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7.2k
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Comment: C: Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (
updated 4.5 years ago by 85k • written 4.5 years ago by ▴ 670
0
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1
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2.3k
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Comment: C: query regarding using manifest and annotation in Minfi (EPIC Methylation array a
4.5 years ago by prasundutta87 ▴ 670
0
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2
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2.3k
views
query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)
R Minfi EPIC array Methylation
updated 3.6 years ago by • 0 • written 4.5 years ago by ▴ 670
0
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0
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888
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Comment: C: array jobs accessing one binary in population genetics software
4.6 years ago by prasundutta87 ▴ 670
1
vote
2
replies
888
views
array jobs accessing one binary in population genetics software
population genetics software SGE
updated 4.6 years ago by 85k • written 4.6 years ago by ▴ 670
260 results • Page 2 of 6
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