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Comment: C: query on a pre-process step involving GFF3
6.3 years ago by prasundutta87 ▴ 670
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945
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query on a pre-process step involving GFF3
GFF3 annotation
6.3 years ago by prasundutta87 ▴ 670
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Comment: C: some questions on GFF3
6.3 years ago by prasundutta87 ▴ 670
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some questions on GFF3
GFF GTF annotation
6.3 years ago by prasundutta87 ▴ 670
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2
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2.8k
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gffread query for gff to gtf conversion
GFF GTF annotation software
6.3 years ago by prasundutta87 ▴ 670
1
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0
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2.8k
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Answer: A: gffread query for gff to gtf conversion
6.3 years ago by prasundutta87 ▴ 670
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2.8k
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Comment: C: gffread query for gff to gtf conversion
6.3 years ago by prasundutta87 ▴ 670
11
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5
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9.4k
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HISAT2 MAPQ scoring scheme
alignment
6.4 years ago by prasundutta87 ▴ 670
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0
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1.1k
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Comment: C: sanity check methods for checking genome assembly coordinate changes
6.4 years ago by prasundutta87 ▴ 670
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1.1k
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Comment: C: sanity check methods for checking genome assembly coordinate changes
6.4 years ago by prasundutta87 ▴ 670
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4
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1.1k
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sanity check methods for checking genome assembly coordinate changes
assembly genome sequence
6.4 years ago by prasundutta87 ▴ 670
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0
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1.4k
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Comment: C: variant calling after reference genome is updated
6.4 years ago by prasundutta87 ▴ 670
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0
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1.4k
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Comment: C: variant calling after reference genome is updated
6.4 years ago by prasundutta87 ▴ 670
0
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1
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1.4k
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Comment: C: variant calling after reference genome is updated
6.4 years ago by prasundutta87 ▴ 670
3
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6
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1.4k
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variant calling after reference genome is updated
SNP variant calling WGS
6.4 years ago by prasundutta87 ▴ 670
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0
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5.3k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.6 years ago by prasundutta87 ▴ 670
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1
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5.3k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.6 years ago by prasundutta87 ▴ 670
4
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14
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5.3k
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Strategy in WGS variant calling using GATK (CombineGVCF step)
snp variant calling GATK WGS
6.6 years ago by prasundutta87 ▴ 670
0
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2
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5.3k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.6 years ago by prasundutta87 ▴ 670
0
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0
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5.3k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.6 years ago by prasundutta87 ▴ 670
0
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1
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5.3k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.6 years ago by prasundutta87 ▴ 670
1
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1
reply
5.3k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.6 years ago by prasundutta87 ▴ 670
0
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4
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1.2k
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addressing software versions
best practices gatk software error
6.8 years ago by prasundutta87 ▴ 670
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0
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1.2k
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Comment: C: addressing software versions
6.8 years ago by prasundutta87 ▴ 670
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0
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1.2k
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Comment: C: addressing software versions
6.8 years ago by prasundutta87 ▴ 670
1
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0
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13k
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Comment: C: fastqc adapter content
6.8 years ago by prasundutta87 ▴ 670
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0
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13k
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Comment: C: fastqc adapter content
6.8 years ago by prasundutta87 ▴ 670
0
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2
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13k
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Comment: C: fastqc adapter content
6.8 years ago by prasundutta87 ▴ 670
0
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2
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13k
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Comment: C: fastqc adapter content
6.8 years ago by prasundutta87 ▴ 670
8
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10
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13k
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fastqc adapter content
sequencing fastqc quality control
updated 6.8 years ago by 147k • written 6.8 years ago by ▴ 670
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1
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1.5k
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Comment: C: heterozygosity during variant calling in a non-model organism such as Bubalus Bu
6.8 years ago by prasundutta87 ▴ 670
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3
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1.5k
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heterozygosity during variant calling in a non-model organism such as Bubalus Bubalis
next-gen sequencing DNA-seq SNP
6.8 years ago by prasundutta87 ▴ 670
0
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0
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2.5k
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Comment: C: excessive loading time for VCF files in IGV
7.0 years ago by prasundutta87 ▴ 670
0
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1
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2.5k
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Comment: C: excessive loading time for VCF files in IGV
7.0 years ago by prasundutta87 ▴ 670
0
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1
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2.5k
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Comment: C: excessive loading time for VCF files in IGV
7.0 years ago by prasundutta87 ▴ 670
0
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6
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2.5k
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excessive loading time for VCF files in IGV
snp visualization IGV
7.0 years ago by prasundutta87 ▴ 670
0
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0
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1.2k
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Comment: C: some good practices doubts
7.0 years ago by prasundutta87 ▴ 670
0
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0
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7.7k
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Answer: A: How to extract reads with a known variant form a bam file
7.0 years ago by prasundutta87 ▴ 670
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1
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5.1k
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Answer: A: annotating strand orientation
7.0 years ago by prasundutta87 ▴ 670
1
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0
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35k
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Answer: Answer: extract only geneID and gene symbol from GTF file
updated 21 months ago by 44k • written 7.0 years ago by ▴ 670
0
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0
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1.5k
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strand information issue for overlapping exons
RNA-Seq alignment exon
7.1 years ago by prasundutta87 ▴ 670
0
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0
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1.8k
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Comment: C: Splitting reference genome for alignment
7.1 years ago by prasundutta87 ▴ 670
3
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3
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1.8k
views
Splitting reference genome for alignment
alignment genome gene
updated 7.1 years ago by 164k • written 7.1 years ago by ▴ 670
0
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0
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1.7k
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Comment: C: variant calling by GATK question about alignment
7.1 years ago by prasundutta87 ▴ 670
0
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1
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2.1k
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Comment: C: detecting allele specific expression of a gene at a specific locus without havin
7.2 years ago by prasundutta87 ▴ 670
1
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0
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5.0k
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Comment: C: long reads Pacbio SNP calling
7.2 years ago by prasundutta87 ▴ 670
0
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1
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1.5k
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Comment: C: allelic unbalance for multiplex PCR based amplicon data
7.2 years ago by prasundutta87 ▴ 670
0
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1
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2.1k
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Comment: C: detecting allele specific expression of a gene at a specific locus without havin
7.2 years ago by prasundutta87 ▴ 670
1
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5
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2.1k
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detecting allele specific expression of a gene at a specific locus without having any information about parental genomes
RNA-Seq snp alignment gene
updated 7.2 years ago by ★ 1.6k • written 7.7 years ago by ▴ 670
1
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0
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2.0k
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Comment: C: Homozygous exonic markers from AI analysis
7.2 years ago by prasundutta87 ▴ 670
260 results • Page 4 of 6
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