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2.1k
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Comment: C: Extracting contaminated reads from the sequenced data
5.9 years ago by kspata ▴ 90
0
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0
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966
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Identify RNA and non-AAV vector molecules in a sample
assembly alignment contamination
5.9 years ago by kspata ▴ 90
0
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1
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1.7k
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Comment: C: PhiX forward and reverse reads for MiSeq and NextSeq Platform
5.9 years ago by kspata ▴ 90
1
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3
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1.7k
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PhiX forward and reverse reads for MiSeq and NextSeq Platform
sequencing next-gen Illumina
5.9 years ago by kspata ▴ 90
0
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0
replies
1.4k
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Comment: C: Missing sequence from a cosmid de novo assembly
5.9 years ago by kspata ▴ 90
0
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1
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1.4k
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Comment: C: Missing sequence from a cosmid de novo assembly
5.9 years ago by kspata ▴ 90
0
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1
reply
1.4k
views
Comment: C: Error in parsing BAM file using readAlligned
5.9 years ago by kspata ▴ 90
0
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3
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1.4k
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Error in parsing BAM file using readAlligned
R alignment gene
updated 5.9 years ago by 14k • written 5.9 years ago by ▴ 90
0
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1
reply
2.5k
views
Merge Samtools and Freebayes vcf files
alignment exome variants
updated 6.0 years ago by 164k • written 6.0 years ago by ▴ 90
0
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4
replies
1.4k
views
Missing sequence from a cosmid de novo assembly
assembly spades de novo sequencing
updated 6.0 years ago by ★ 5.0k • written 6.0 years ago by ▴ 90
0
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1
reply
1.4k
views
Comment: C: Obtaining depth for all positions for different exonic ranges from mpileup file
6.0 years ago by kspata ▴ 90
1
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4
replies
1.4k
views
Obtaining depth for all positions for different exonic ranges from mpileup file
next-gen gene resequencing exonic coverage
updated 6.0 years ago by 164k • written 6.0 years ago by ▴ 90
7
votes
2
replies
2.9k
views
Current version of human reference Genome Assembly
genome reference Assembly
updated 6.1 years ago by ★ 3.8k • written 6.1 years ago by ▴ 90
0
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0
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768
views
reformat forward and reverse read pairs for variant analysis of exons
assembly variant calling gene exon capture
6.1 years ago by kspata ▴ 90
0
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2
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2.5k
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Comment: C: de novo assembly of circular plasmid
6.2 years ago by kspata ▴ 90
1
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4
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2.5k
views
de novo assembly of circular plasmid
assembly de novo spades plasmids
updated 6.2 years ago by ★ 1.9k • written 6.2 years ago by ▴ 90
1
vote
1
reply
957
views
Strategy to detect deletions in the PE 300 reads
sequencing Assembly SNP Indels
6.2 years ago by kspata ▴ 90
2
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5
replies
2.6k
views
Merge multiple overlapping consensus sequences
assembly consensus
updated 6.2 years ago by 44k • written 6.4 years ago by ▴ 90
0
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0
replies
1.4k
views
Comment: C: Deletions in a consensus sequence.
6.2 years ago by kspata ▴ 90
0
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2
replies
1.4k
views
Deletions in a consensus sequence.
alignment sequencing Deletions Consnesus Sequence
6.2 years ago by kspata ▴ 90
0
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0
replies
883
views
Deletion detected at less frequency than expected for a plasmid sample
alignment assembly
updated 6.2 years ago by 44k • written 6.2 years ago by ▴ 90
0
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0
replies
1.7k
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Comment: C: download genbank sequences with exon sequences highlighted
6.3 years ago by kspata ▴ 90
2
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3
replies
1.6k
views
Variant Allele Frequency
snp vcf samtools
updated 6.3 years ago by ▴ 300 • written 6.3 years ago by ▴ 90
1
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5
replies
1.7k
views
download genbank sequences with exon sequences highlighted
gene Genbank
updated 6.3 years ago by ▴ 380 • written 6.3 years ago by ▴ 90
0
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0
replies
1.6k
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Comment: C: Variant Allele Frequency
6.3 years ago by kspata ▴ 90
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2
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1.4k
views
Comment: C: Low coverage for bases near the end of target reference sequence
6.3 years ago by kspata ▴ 90
0
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1
reply
1.4k
views
Comment: C: Low coverage for bases near the end of target reference sequence
6.3 years ago by kspata ▴ 90
0
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7
replies
1.4k
views
Low coverage for bases near the end of target reference sequence
alignment bowtie2 sequencing
6.3 years ago by kspata ▴ 90
0
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0
replies
1.7k
views
Answer: A: Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
6.4 years ago by kspata ▴ 90
3
votes
1
reply
1.2k
views
Base by base alignment from BLAST to reference
Blast alignment
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 90
0
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1
reply
2.3k
views
Comment: C: How to find rs numbers from Coriell ID
6.4 years ago by kspata ▴ 90
1
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4
replies
2.3k
views
How to find rs numbers from Coriell ID
dbSNP 1000Genomes Coriell ID rs numbers
6.4 years ago by kspata ▴ 90
0
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1
reply
3.2k
views
Comment: C: How to know if a variant is sequencing or mapping artifact?
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 90
6
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4
replies
3.2k
views
How to know if a variant is sequencing or mapping artifact?
Variant freebayes vcf
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 90
0
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0
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2.9k
views
Comment: C: Generate Consensus Sequence from Pairwise Alignment
6.4 years ago by kspata ▴ 90
0
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2
replies
2.9k
views
Generate Consensus Sequence from Pairwise Alignment
alignment Consensus Blast
6.4 years ago by kspata ▴ 90
0
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1
reply
2.6k
views
Comment: C: Merge multiple overlapping consensus sequences
6.4 years ago by kspata ▴ 90
1
vote
1
reply
2.2k
views
Find variants supported by at least 20 reads freebayes
Freebayes Variant Calling
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 90
0
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1
reply
1.4k
views
Comment: C: Mpileup generation using Bisulfite converted reference
6.5 years ago by kspata ▴ 90
0
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3
replies
1.4k
views
Mpileup generation using Bisulfite converted reference
mpileup faidx samtools bismark bisulfite
6.5 years ago by kspata ▴ 90
0
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0
replies
1.2k
views
Methylation Status of CpG islands for a specific gene
gene R BS methylKit Bismark
6.5 years ago by kspata ▴ 90
9
votes
13
replies
7.7k
views
Calculate Mapping Rate for an alignment to each sequence of a multi-fasta reference
RNA-Seq SAMtools flagstat bowtie2 Mapping Rate
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 90
0
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0
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7.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
6.6 years ago by kspata ▴ 90
0
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1
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7.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
6.6 years ago by kspata ▴ 90
0
votes
0
replies
7.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
6.6 years ago by kspata ▴ 90
0
votes
1
reply
7.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
6.6 years ago by kspata ▴ 90
0
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2
replies
7.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
6.6 years ago by kspata ▴ 90
0
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0
replies
3.3k
views
Comment: C: Convert blastn to gff3
7.6 years ago by kspata ▴ 90
3
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3
replies
3.3k
views
Convert blastn to gff3
blastp gff3 blastn gff3
7.6 years ago by kspata ▴ 90
0
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0
replies
1.5k
views
Comment: C: CRISPR repeat identification tool comparison
7.7 years ago by kspata ▴ 90
105 results • Page 2 of 3
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