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Tools for whole genome alignment sequence conservation scoring?
genome vista whole WGA synteny alignment
3.0 years ago by Jake Warner ▴ 840
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8
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2.7k
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Alternatives to RepeatModeler / nseg install fail
annotation MAKER
updated 5.0 years ago by 8.9k • written 5.7 years ago by ▴ 840
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Comment: C: RepeatModeler nseg installation problem
5.4 years ago by Jake Warner ▴ 840
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2.6k
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Comment: C: RepeatModeler nseg installation problem
5.4 years ago by Jake Warner ▴ 840
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2
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2.7k
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Comment: C: Alternatives to RepeatModeler / nseg install fail
5.7 years ago by Jake Warner ▴ 840
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6.0k
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Answer: A: Is there any alternative for CD_Hit to remove redundancy from asemmbled trinity
6.4 years ago by Jake Warner ▴ 840
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4.7k
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Answer: A: local web BLAST server
6.4 years ago by Jake Warner ▴ 840
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3.8k
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Comment: C: WGCNA network with condition and normal samples
6.4 years ago by Jake Warner ▴ 840
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2.5k
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Comment: C: Problem for understanding the number of modules in construction network based on
6.4 years ago by Jake Warner ▴ 840
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2
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3.8k
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Answer: A: WGCNA network with condition and normal samples
6.4 years ago by Jake Warner ▴ 840
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1
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2.5k
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Answer: A: Problem for understanding the number of modules in construction network based on
6.5 years ago by Jake Warner ▴ 840
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2.5k
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Answer: A: Clustering and extracting gene IDs with same expression profiles
6.7 years ago by Jake Warner ▴ 840
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3.6k
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Comment: C: Sensitive (BLAST like) and fast alignment of millions of sequences against human
6.8 years ago by Jake Warner ▴ 840
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13k
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Answer: A: How do you extract data coordinates from PCA in R?
6.8 years ago by Jake Warner ▴ 840
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5.0k
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Comment: C: RShiny interactive volcano plots
6.9 years ago by Jake Warner ▴ 840
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5.0k
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Answer: C: RShiny interactive volcano plots
6.9 years ago by Jake Warner ▴ 840
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3.0k
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Comment: C: RNA-seq Co-expression network construction from the output of DESeq2
6.9 years ago by Jake Warner ▴ 840
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3.0k
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Comment: C: RNA-seq Co-expression network construction from the output of DESeq2
7.0 years ago by Jake Warner ▴ 840
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3.0k
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Answer: A: RNA-seq Co-expression network construction from the output of DESeq2
7.0 years ago by Jake Warner ▴ 840
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2.0k
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Comment: C: How do you find similar gene expression pattern to your GOI?
7.0 years ago by Jake Warner ▴ 840
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4.4k
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Comment: C: trimming RNA-seq reads with adapter sequence?index? using trimmomatic
7.0 years ago by Jake Warner ▴ 840
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1
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4.4k
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Answer: A: trimming RNA-seq reads with adapter sequence?index? using trimmomatic
7.0 years ago by Jake Warner ▴ 840
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2.7k
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Comment: C: How to add GO pValue in blast2GO ?
7.0 years ago by Jake Warner ▴ 840
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1
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5.1k
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Answer: A: RSEM error: RSEM currently does not support gapped alignments, sorry!
7.0 years ago by Jake Warner ▴ 840
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3.3k
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Comment: C: Time course experiment in RNASeq
7.0 years ago by Jake Warner ▴ 840
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1
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9.6k
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Comment: C: UniProt ID mapping API call
7.0 years ago by Jake Warner ▴ 840
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2
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4.9k
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Answer: A: Computing the K for K-means clustering for a set of genes
7.1 years ago by Jake Warner ▴ 840
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1
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3.0k
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Comment: C: Best tools for Visualing RNASeq data
7.1 years ago by Jake Warner ▴ 840
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2.8k
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Comment: C: up regulated and down regulated genes in co expression network
7.1 years ago by Jake Warner ▴ 840
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5.1k
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Comment: C: what is the meaning of semantic x space in REVIGO scatterplot?
7.1 years ago by Jake Warner ▴ 840
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1.7k
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Answer: A: blast results: grepping and replacing
7.1 years ago by Jake Warner ▴ 840
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1
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2.5k
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Answer: A: How to extract from original counts genes with > or equal 2 fold change and FDR
7.1 years ago by Jake Warner ▴ 840
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1
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3.8k
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Comment: C: WGCNA and VisAnt
7.1 years ago by Jake Warner ▴ 840
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3.8k
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Answer: A: WGCNA and VisAnt
7.1 years ago by Jake Warner ▴ 840
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1
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2.7k
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Comment: C: Question: Rna Raw Count and Gene expression correlation
7.1 years ago by Jake Warner ▴ 840
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2.1k
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Answer: A: Confusion regarding WGCNA
7.1 years ago by Jake Warner ▴ 840
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2.5k
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Comment: C: About clustering genes isoforms in RNA-Seq
7.2 years ago by Jake Warner ▴ 840
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2.2k
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Comment: C: Quantification of a gene that is not in the reference genome
7.2 years ago by Jake Warner ▴ 840
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1
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2.9k
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Answer: A: RSEM output file format
7.2 years ago by Jake Warner ▴ 840
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2
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2.2k
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Answer: A: Quantification of a gene that is not in the reference genome
7.2 years ago by Jake Warner ▴ 840
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2
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3.6k
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Answer: A: Rename the fasta entries in Unix or R
7.2 years ago by Jake Warner ▴ 840
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1
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5.2k
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Comment: C: How to use heatmap.2 to plot the top20 abundant OTUs?
7.2 years ago by Jake Warner ▴ 840
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0
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4.3k
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Comment: C: RNA-Seq time course DESeq2 analysis
7.2 years ago by Jake Warner ▴ 840
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1
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1.9k
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Answer: A: How to find expression data-set derive from RNA-Seq experiments
7.2 years ago by Jake Warner ▴ 840
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0
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2.3k
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Answer: A: RNA-seq from Co-culture, can I filter out the reads that map to one species and
7.3 years ago by Jake Warner ▴ 840
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0
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2.1k
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Comment: C: Lots of antisense transcripts in my annotation?
7.3 years ago by Jake Warner ▴ 840
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1
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4.3k
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Comment: C: RNA-Seq time course DESeq2 analysis
7.3 years ago by Jake Warner ▴ 840
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3.8k
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Answer: A: Heatmap for RNA-Seq data
7.4 years ago by Jake Warner ▴ 840
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1
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3.8k
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Comment: C: [Blastn]Alignment result changes after using -max_target_seqs option
7.4 years ago by Jake Warner ▴ 840
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0
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6.2k
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Comment: C: venneuler in R not drawing to proportion
7.4 years ago by Jake Warner ▴ 840
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