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2
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1.4k
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Answer: C: Interested in RNA-Seq splicing analysis - go for paired-end shorter or single-en
4.8 years ago by Amitm ★ 2.3k
2
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0
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966
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Answer: C: How I deal with redundant genes in microarray
4.8 years ago by Amitm ★ 2.3k
0
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0
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3.5k
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Comment: C: Low percent of RNA-seq reads mapping
4.8 years ago by Amitm ★ 2.3k
0
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1
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3.5k
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Comment: C: Low percent of RNA-seq reads mapping
4.8 years ago by Amitm ★ 2.3k
2
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1
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3.5k
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Answer: A: Low percent of RNA-seq reads mapping
4.8 years ago by Amitm ★ 2.3k
0
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0
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1.2k
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Comment: C: database for mouse tumor supressor genes and oncogenes
4.8 years ago by Amitm ★ 2.3k
1
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0
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1.1k
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Comment: C: Call CNVs using gene positions
4.8 years ago by Amitm ★ 2.3k
0
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0
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681
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Comment: C: Processed loci from Cufflinks
4.8 years ago by Amitm ★ 2.3k
1
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0
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1.0k
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Comment: C: Using dbSNP dataset
4.8 years ago by Amitm ★ 2.3k
5
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1
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1.8k
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Answer: A: What is a better strategy for finding novel transcripts?
4.8 years ago by Amitm ★ 2.3k
0
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0
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3.1k
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Answer: A: What is the state of multi-omics dataset ?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
0
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1
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3.2k
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Comment: C: Ballgown plotTranscripts function
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
1
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0
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12k
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Answer: C: how to download gene annotation bed file from ensembl?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
1
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0
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3.2k
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Comment: C: analyzing RNAseq data in cytoscape
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
0
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2
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3.2k
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Comment: Comment: analyzing RNAseq data in cytoscape
updated 2.5 years ago by 44k • written 8.8 years ago by ★ 2.3k
1
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0
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2.8k
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Answer: A: Agilent SureSelect design miss some target regions
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
0
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2
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3.8k
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Comment: C: Could you explain the percentage of A, C , G, T in hg19 ?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
0
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1
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3.5k
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Answer: C: Obtaining length and %GC of genes using Biomart
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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10k
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Comment: Comment: Calculating Mapping Coverage
updated 3.1 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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0
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8.2k
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Answer: A: RefSeq Ids(NM*, NR*) to ensemble transcript Ids (ENST*)
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.3k
0
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0
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3.7k
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Comment: C: Somatic allele frequency from TCGA in non-coding DNA
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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3.7k
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Comment: C: Somatic allele frequency from TCGA in non-coding DNA
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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2.3k
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Comment: C: co-expression of genes in normal and cancer
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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0
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3.1k
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Comment: C: htseq-count produces no features amid alignment
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
2
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1
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17k
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Comment: C: How to efficiently remove a list of reads from BAM file?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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1
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3.0k
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Comment: C: Pipeline for RNA-seq analysis
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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0
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8.2k
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Answer: A: Intersect multiple BED files
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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1.8k
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Comment: C: new gene discovery
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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2
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13k
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Comment: C: MarkDuplicates memory issue
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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1.5k
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Comment: C: Download multiple RNAseq experiments
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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4.8k
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Comment: A: Can I use sorted bam files from STAR with Stringtie?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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4.8k
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Answer: A: Can I use sorted bam files from STAR with Stringtie?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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1
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5.0k
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Comment: C: how to add a pseduo gene into a GTF file?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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0
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5.4k
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Comment: C: How can I detect lncRNA?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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1
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5.4k
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Answer: A: How can I detect lncRNA?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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1
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5.1k
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Comment: C: Fusion gene detection software
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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1
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5.1k
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Answer: A: Fusion gene detection software
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 2.3k
2
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1
reply
3.2k
views
Answer: A: RNA Expression Transcript Level Collapse
updated 5.1 years ago by 44k • written 9.4 years ago by ★ 2.3k
0
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0
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3.9k
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Comment: C: faster variant annotation for large VCFs
6.2 years ago by Amitm ★ 2.3k
0
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0
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3.8k
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Comment: C: I can't convert the sam file to fastq file.
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.3k
1
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1
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3.5k
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Comment: C: How can get MAF for set of SNPs from each population based on 1000 Genome?
updated 6.2 years ago by 88k • written 8.7 years ago by ★ 2.3k
1
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0
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3.5k
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Comment: C: How can get MAF for set of SNPs from each population based on 1000 Genome?
updated 6.2 years ago by 88k • written 8.7 years ago by ★ 2.3k
0
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0
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3.9k
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Comment: C: faster variant annotation for large VCFs
6.2 years ago by Amitm ★ 2.3k
0
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0
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4.3k
views
Comment: C: Pipeline of structural variation calling using multiple tools for multiple sampl
updated 6.2 years ago by 44k • written 8.7 years ago by ★ 2.3k
1
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1
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3.3k
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Comment: C: Can RNA-Seq be Used to Predict Non-Synonymous Mutational Load in a Non-Matched S
updated 6.2 years ago by 44k • written 8.7 years ago by ★ 2.3k
3
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8
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3.9k
views
faster variant annotation for large VCFs
vcf variant annotation WGS
updated 6.2 years ago by 24k • written 6.2 years ago by ★ 2.3k
0
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1
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3.9k
views
Comment: C: faster variant annotation for large VCFs
6.2 years ago by Amitm ★ 2.3k
0
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0
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6.4k
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Comment: C: Removing everything after the last underscore in the header of a fastafile
6.2 years ago by Amitm ★ 2.3k
0
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1
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6.4k
views
Answer: A: Removing everything after the last underscore in the header of a fastafile
6.2 years ago by Amitm ★ 2.3k
1
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2
replies
7.5k
views
Answer: C: GISTIC input parameters.
6.2 years ago by Amitm ★ 2.3k
280 results • Page 2 of 6
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