Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
1.2k
views
Answer: A: How to FLAG low quality SNPs in samtools VCF
4.9 years ago by finswimmer 16k
0
votes
1
reply
1.1k
views
Comment: C: Extracting Allele Frequencies at a set of given positions
5.0 years ago by finswimmer 16k
1
vote
0
replies
2.2k
views
Answer: A: Extract N amino acids from fasta file
5.0 years ago by finswimmer 16k
1
vote
1
reply
4.0k
views
Comment: C: Switch ref/alt alleles vcf file
5.0 years ago by finswimmer 16k
6
votes
10
replies
4.4k
views
tabix for ID column
snp tabix
updated 3.2 years ago by ★ 9.5k • written 7.4 years ago by 16k
7
votes
3
replies
6.6k
views
Answer: C: sorting a multi-sample (genotype) vcf file
5.0 years ago by finswimmer 16k
0
votes
0
replies
35k
views
Comment: C: How to read fastq file with Python
5.0 years ago by finswimmer 16k
0
votes
0
replies
9.5k
views
Comment: C: bcftools variant filteration
5.0 years ago by finswimmer 16k
0
votes
0
replies
3.2k
views
Comment: C: Error with bcftools and vcftools and removing individuals
5.0 years ago by finswimmer 16k
2
votes
1
reply
1.6k
views
Answer: A: Does BQSR remove duplicate sequence in library?
5.0 years ago by finswimmer 16k
0
votes
1
reply
3.2k
views
Comment: C: merge multiple files by commom column names
5.0 years ago by finswimmer 16k
0
votes
1
reply
3.2k
views
Comment: C: merge multiple files by commom column names
5.0 years ago by finswimmer 16k
0
votes
1
reply
3.2k
views
Comment: C: merge multiple files by commom column names
5.0 years ago by finswimmer 16k
5
votes
1
reply
3.2k
views
Answer: A: merge multiple files by commom column names
5.0 years ago by finswimmer 16k
5
votes
1
reply
6.1k
views
Answer: A: Extract columns from VCF file using bcftools preserving all the header info
5.0 years ago by finswimmer 16k
2
votes
0
replies
2.1k
views
Answer: Answer: How to turn off Quality score binning in bcl2fastq
5.0 years ago by finswimmer 16k
3
votes
0
replies
905
views
Answer: A: Differences in HGVS notation
5.0 years ago by finswimmer 16k
1
vote
1
reply
2.4k
views
Comment: C: Bcftools concat gives chromosome contiguous error?
5.0 years ago by finswimmer 16k
0
votes
0
replies
6.7k
views
Comment: C: Extract specific sequence from FASTA file
5.0 years ago by finswimmer 16k
0
votes
1
reply
2.6k
views
Comment: C: bcftools mpileup with --region option output wrong consequence
5.0 years ago by finswimmer 16k
0
votes
1
reply
2.6k
views
Comment: C: bcftools mpileup with --region option output wrong consequence
5.1 years ago by finswimmer 16k
3
votes
1
reply
3.9k
views
Comment: C: filter vcf to include only sites which have at least one homozygous alt call
5.1 years ago by finswimmer 16k
0
votes
1
reply
1.8k
views
Comment: C: How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
5.1 years ago by finswimmer 16k
0
votes
1
reply
6.0k
views
Comment: C: how to merge gvcf using bcftools
5.1 years ago by finswimmer 16k
0
votes
1
reply
6.0k
views
Comment: C: how to merge gvcf using bcftools
5.1 years ago by finswimmer 16k
1
vote
1
reply
2.3k
views
Comment: C: awk, copy and paste single line command
5.1 years ago by finswimmer 16k
0
votes
1
reply
6.0k
views
Comment: C: how to merge gvcf using bcftools
5.1 years ago by finswimmer 16k
1
vote
0
replies
1.9k
views
Comment: C: Removing the last part of fasta header in many alignmnet files
5.1 years ago by finswimmer 16k
2
votes
1
reply
5.8k
views
Comment: C: pysam alignment error
5.1 years ago by finswimmer 16k
1
vote
1
reply
5.8k
views
Comment: C: pysam alignment error
5.1 years ago by finswimmer 16k
1
vote
1
reply
2.0k
views
Comment: C: vcftools minDP filter not working for samtools genotype calling output
5.1 years ago by finswimmer 16k
1
vote
2
replies
5.8k
views
Comment: C: pysam alignment error
5.1 years ago by finswimmer 16k
0
votes
1
reply
5.8k
views
Comment: C: pysam alignment error
5.1 years ago by finswimmer 16k
0
votes
0
replies
999
views
Comment: C: Output bigger than input. VCFtools
5.1 years ago by finswimmer 16k
0
votes
1
reply
1.5k
views
Comment: C: non-SNP variants in a vcf merge file
5.1 years ago by finswimmer 16k
0
votes
0
replies
1.5k
views
Comment: C: Comparing calls from different VCFs
5.1 years ago by finswimmer 16k
1
vote
0
replies
2.8k
views
Comment: C: Loop to change a @RG in a BAM file
5.1 years ago by finswimmer 16k
1
vote
0
replies
2.4k
views
Comment: C: Error: Bad BCF record - shared section malformed or too short after vcftools fil
5.1 years ago by finswimmer 16k
2
votes
1
reply
2.4k
views
Comment: C: Error: Bad BCF record - shared section malformed or too short after vcftools fil
5.1 years ago by finswimmer 16k
2
votes
0
replies
952
views
Answer: A: Entrez loop errors
5.1 years ago by finswimmer 16k
0
votes
0
replies
5.5k
views
Comment: C: cram to bam conversion
5.2 years ago by finswimmer 16k
0
votes
0
replies
8.8k
views
Answer: A: Python FASTA scripting
5.2 years ago by finswimmer 16k
0
votes
1
reply
1.2k
views
Comment: C: Double Check VCF Calls in Corresponding .bam Files
5.2 years ago by finswimmer 16k
0
votes
0
replies
17k
views
Comment: C: Generating consensus sequence from bam file
5.2 years ago by finswimmer 16k
1
vote
1
reply
17k
views
Comment: C: Generating consensus sequence from bam file
5.2 years ago by finswimmer 16k
1
vote
0
replies
1.4k
views
Comment: C: How to handle allosomes and chrM in GATK?
5.2 years ago by finswimmer 16k
1
vote
0
replies
1.2k
views
Comment: C: Need tool for Convert vcf into fa
5.2 years ago by finswimmer 16k
0
votes
0
replies
819
views
Comment: C: Identify how many inserts mapped to a region
5.2 years ago by finswimmer 16k
0
votes
1
reply
2.3k
views
Comment: C: Clipping primer after alignment
5.2 years ago by finswimmer 16k
1
vote
0
replies
1.2k
views
Answer: A: Generating consensus sequence from bam file
5.2 years ago by finswimmer 16k
1,610 results • Page 2 of 33
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6