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Comment: C: Clipping primer after alignment
5.2 years ago by finswimmer 16k
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2.3k
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Clipping primer after alignment
bam clipping
updated 3.5 years ago by ▴ 30 • written 5.2 years ago by 16k
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1.1k
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Comment: C: How to generate consensus fasta uninterleaved from bam?
5.2 years ago by finswimmer 16k
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1.3k
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Comment: C: Generation of incorrect heterozygous calls after left normalization using bcftoo
5.2 years ago by finswimmer 16k
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1.3k
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Comment: C: Generation of incorrect heterozygous calls after left normalization using bcftoo
5.2 years ago by finswimmer 16k
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1.3k
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Comment: C: bcftools merge creates high missingness rate
5.2 years ago by finswimmer 16k
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902
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Comment: C: multi sample vcf to data matrix
5.2 years ago by finswimmer 16k
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1.1k
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Comment: C: Consensus sequence from multiple BAM files on a single position
5.2 years ago by finswimmer 16k
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1.4k
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Comment: C: bedtool getfasta only reads the first line of my bedfile
5.2 years ago by finswimmer 16k
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1.1k
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Answer: A: 1000 Human Genomes Project Population Alignment Data
5.2 years ago by finswimmer 16k
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1
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1.4k
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Comment: C: bedtool getfasta only reads the first line of my bedfile
5.2 years ago by finswimmer 16k
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1.4k
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Comment: C: Bam QC, GC content
5.2 years ago by finswimmer 16k
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1
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1.0k
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Comment: C: .bam mpileup mapping quality
5.2 years ago by finswimmer 16k
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1.1k
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Comment: C: Filtering for homozygous reference alleles
5.2 years ago by finswimmer 16k
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987
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Comment: C: how to extract just one fast sequence from a multiple sequence vcf?
5.2 years ago by finswimmer 16k
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1
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4.1k
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Comment: C: Error: malformed header while uploading .vcf.gz files to Michigan imputation ser
5.3 years ago by finswimmer 16k
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3.1k
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Comment: C: Filtering GFF3 file
5.3 years ago by finswimmer 16k
1
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1
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994
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Answer: C: bcftools merge heterozygous calls
5.3 years ago by finswimmer 16k
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1
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8.9k
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Comment: C: Snakemake input and wildcards
5.3 years ago by finswimmer 16k
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3.1k
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Comment: C: Filtering GFF3 file
5.3 years ago by finswimmer 16k
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1
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3.1k
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Comment: C: Filtering GFF3 file
5.3 years ago by finswimmer 16k
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0
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1.1k
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Answer: A: Manifest and off target
5.3 years ago by finswimmer 16k
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0
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905
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Comment: C: bcftools merge heterozygous calls
5.3 years ago by finswimmer 16k
3
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1
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1.3k
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Comment: C: Running blast command line inside python script
5.3 years ago by finswimmer 16k
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2.0k
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Comment: C: Add tag to FORMAT tab of vcf
5.3 years ago by finswimmer 16k
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1.7k
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Comment: C: Pysam--how to check for empty results in fetch(region) of bam file
5.3 years ago by finswimmer 16k
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0
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972
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Comment: C: Merging SNV and DIV vcfs of the same Individual
5.3 years ago by finswimmer 16k
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5.3k
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Comment: C: bcftools merge duplicate names
5.3 years ago by finswimmer 16k
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5.3k
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Comment: C: bcftools merge duplicate names
5.3 years ago by finswimmer 16k
4
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1
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4.4k
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Answer: A: Consensus reads from UMIs
5.3 years ago by finswimmer 16k
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0
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2.7k
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Comment: C: Fasta extraction from bed file
5.3 years ago by finswimmer 16k
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0
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4.7k
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Comment: C: bcftools and VCFTools consensus functionality both not working unless there are
5.3 years ago by finswimmer 16k
1
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0
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1.2k
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Answer: A: How to remove all characters after a specific pattern?
5.3 years ago by finswimmer 16k
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1
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4.1k
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Comment: C: Remove line with awk in vcf.gz
5.3 years ago by finswimmer 16k
3
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1
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4.1k
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Answer: A: Remove line with awk in vcf.gz
5.3 years ago by finswimmer 16k
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0
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1.8k
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Comment: C: Complementary strand in cluster generation
5.3 years ago by finswimmer 16k
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0
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31k
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Comment: C: bcftools-merge for vcf files
5.3 years ago by finswimmer 16k
1
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1
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1.7k
views
Answer: A: skipping column names using awk
5.3 years ago by finswimmer 16k
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1
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1.6k
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Comment: C: SAM file generation problem
5.3 years ago by finswimmer 16k
4
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1
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28k
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Answer: A: Creating workflows with snakemake and conda
5.3 years ago by finswimmer 16k
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0
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1.6k
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Comment: C: BCF missing sample names
5.3 years ago by finswimmer 16k
1
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1
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31k
views
Comment: C: bcftools-merge for vcf files
5.3 years ago by finswimmer 16k
0
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0
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1.0k
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Answer: A: Compare results of test pipelines with the ones from GIAB
5.3 years ago by finswimmer 16k
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1
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2.5k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
5.3 years ago by finswimmer 16k
3
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1
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31k
views
Answer: A: bcftools-merge for vcf files
5.3 years ago by finswimmer 16k
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1
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1.6k
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Comment: C: BCF missing sample names
5.3 years ago by finswimmer 16k
2
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1
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2.4k
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Comment: C: Command line explain
5.3 years ago by finswimmer 16k
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1
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2.3k
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Answer: A: Amount of variants increased after bedtools subtract
5.3 years ago by finswimmer 16k
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0
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1.1k
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Comment: C: SNPEff missing annotations from VCF?
5.3 years ago by finswimmer 16k
4
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0
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15k
views
Answer: C: Error : Could not build fai index
5.3 years ago by finswimmer 16k
1,610 results • Page 3 of 33
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