Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
15k
views
Comment: C: Error : Could not build fai index
5.3 years ago by finswimmer 16k
1
vote
0
replies
4.1k
views
Comment: C: using GNU parallel for bwa mem and samtools
5.3 years ago by finswimmer 16k
0
votes
1
reply
1.1k
views
Comment: C: SNPEff missing annotations from VCF?
5.3 years ago by finswimmer 16k
3
votes
2
replies
2.4k
views
Comment: C: Command line explain
5.3 years ago by finswimmer 16k
0
votes
0
replies
1.5k
views
Comment: C: random selection of multi-sample vcf does not work
5.3 years ago by finswimmer 16k
4
votes
1
reply
1.9k
views
Answer: A: Bridge Amplification error rate and duplicates in NGS
5.3 years ago by finswimmer 16k
1
vote
0
replies
4.0k
views
Answer: A: cut the sequence from fasta file
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.8k
views
Answer: A: parsing gbk file to get fna file
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.6k
views
Comment: C: Getting different results from bedtools and samtools
5.4 years ago by finswimmer 16k
0
votes
0
replies
798
views
Comment: C: samtools having to use -A input option
5.4 years ago by finswimmer 16k
0
votes
1
reply
1.6k
views
Comment: C: Getting different results from bedtools and samtools
5.4 years ago by finswimmer 16k
3
votes
0
replies
1.5k
views
Comment: C: Unable to generate VCF
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.9k
views
Comment: C: How to remove duplicate fasta sequences from a file
5.4 years ago by finswimmer 16k
2
votes
1
reply
1.9k
views
Answer: A: How to remove duplicate fasta sequences from a file
5.4 years ago by finswimmer 16k
2
votes
1
reply
1.7k
views
Answer: C: User error while using GATK SplitNcigarReads
5.4 years ago by finswimmer 16k
4
votes
1
reply
2.0k
views
Answer: C: Samtools mplileup detects wrong INDEL positions
5.4 years ago by finswimmer 16k
0
votes
1
reply
2.0k
views
Comment: C: Samtools mplileup detects wrong INDEL positions
5.4 years ago by finswimmer 16k
2
votes
1
reply
1.4k
views
Answer: C: unknown genotype in a vcf file
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.5k
views
Comment: C: missingoutputexception, snakemake after completing 95% analysis
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.0k
views
Comment: C: How do I get PyVCF to give me an error if the record it is fetching doesn't exis
5.4 years ago by finswimmer 16k
0
votes
0
replies
6.7k
views
Comment: C: Issue With CRAM -> BAM -> FASTQ Conversion
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.5k
views
Comment: C: extract region from the bam file
5.4 years ago by finswimmer 16k
0
votes
1
reply
1.5k
views
Comment: C: extract region from the bam file
5.4 years ago by finswimmer 16k
3
votes
0
replies
2.4k
views
Answer: A: Column explanation for repeat database from UCSC
5.4 years ago by finswimmer 16k
3
votes
0
replies
4.6k
views
Answer: A: Using tabix to read a tsv.bgz with genomic coordinate in single column<chromosom
5.4 years ago by finswimmer 16k
0
votes
0
replies
822
views
Comment: C: How can i add the same sequence starting from the last of a sequence in a multi-
5.4 years ago by finswimmer 16k
0
votes
1
reply
2.7k
views
Comment: C: How to find pattern matching over range of columns but not present in other colu
5.4 years ago by finswimmer 16k
0
votes
1
reply
3.6k
views
Comment: C: Manually calculate Minor Allele Frequency in this VCF
5.4 years ago by finswimmer 16k
1
vote
1
reply
8.6k
views
Comment: C: Error installing bcl2fastq 2.20 in make step - Ubuntu 18.04
5.4 years ago by finswimmer 16k
5
votes
1
reply
4.8k
views
Answer: C: Tabix on bed file can't parse
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.2k
views
Comment: C: bcftools view: index -R not better than -T
5.4 years ago by finswimmer 16k
0
votes
1
reply
2.9k
views
Comment: C: Filtered a .vcf file based on id of a second file
5.4 years ago by finswimmer 16k
1
vote
1
reply
2.1k
views
Comment: C: Unable to find FASTA index entry for 'unitig_2993_pilon error.
5.4 years ago by finswimmer 16k
0
votes
1
reply
2.1k
views
Comment: C: Unable to find FASTA index entry for 'unitig_2993_pilon error.
5.4 years ago by finswimmer 16k
11
votes
2
replies
20k
views
Answer: A: extract and generate a VCF file with only "PASS"
5.4 years ago by finswimmer 16k
0
votes
0
replies
6.5k
views
Comment: C: Samtools: How to extract reads with MAPQ 0?
5.4 years ago by finswimmer 16k
0
votes
0
replies
1.8k
views
Comment: C: Sorting an already sorted file with samtools reduced its size
5.4 years ago by finswimmer 16k
0
votes
0
replies
2.6k
views
Answer: A: Identifying unique SNPs between species
5.4 years ago by finswimmer 16k
2
votes
0
replies
3.0k
views
Answer: A: Merge VCF files with diploid reference calls in different order for same positio
5.4 years ago by finswimmer 16k
4
votes
1
reply
1.7k
views
Answer: A: Triplet frequencies in human genome
5.5 years ago by finswimmer 16k
1
vote
0
replies
7.8k
views
Comment: C: Removing homozygous reference genotypes from multi-sample vcf file
5.5 years ago by finswimmer 16k
3
votes
1
reply
7.8k
views
Answer: A: Removing homozygous reference genotypes from multi-sample vcf file
5.5 years ago by finswimmer 16k
1
vote
1
reply
7.8k
views
Comment: C: Removing homozygous reference genotypes from multi-sample vcf file
5.5 years ago by finswimmer 16k
0
votes
0
replies
1.3k
views
Comment: C: -C 50 parameter MPILEUP
5.5 years ago by finswimmer 16k
1
vote
1
reply
2.0k
views
Comment: C: Error in SAM to BAM conversion
5.5 years ago by finswimmer 16k
2
votes
1
reply
3.0k
views
Answer: C: snpEff: Fatal error reading file the input VCF files and stop runing
5.5 years ago by finswimmer 16k
0
votes
0
replies
1.7k
views
Comment: C: No reads in IGV at the positions indicated by the bed file
5.5 years ago by finswimmer 16k
2
votes
0
replies
3.0k
views
Answer: A: tabix to exclude chromosomes from vcf
5.5 years ago by finswimmer 16k
0
votes
1
reply
1.7k
views
Comment: C: snpEff for bacteria genome
5.5 years ago by finswimmer 16k
4
votes
0
replies
4.1k
views
Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
5.5 years ago by finswimmer 16k
1,610 results • Page 4 of 33
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6