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Comment: C: Available tools that can pick up the the alignment with highest mapping quality
5.5 years ago by finswimmer 16k
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Answer: A: samtools SNP calling
5.5 years ago by finswimmer 16k
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Comment: C: Any database can substitute OMIM?
5.5 years ago by finswimmer 16k
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1.6k
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Comment: C: Replacing missing SNPs of one individual with reference alleles in a vcf file
5.5 years ago by finswimmer 16k
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Answer: A: awk to organize bed file
5.5 years ago by finswimmer 16k
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Comment: C: get consensus sequence from bam file with insertions
5.5 years ago by finswimmer 16k
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3.7k
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Comment: C: get consensus sequence from bam file with insertions
5.5 years ago by finswimmer 16k
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2.2k
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Comment: C: Extracting MAF for a list of SNPs
5.5 years ago by finswimmer 16k
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6.4k
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Comment: C: Merge contigs in fasta file
5.6 years ago by finswimmer 16k
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6.4k
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Answer: A: Merge contigs in fasta file
5.6 years ago by finswimmer 16k
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1.9k
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Answer: A: Which reference genome for the annotation of the 1KG variant data by snpEff?
5.6 years ago by finswimmer 16k
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1.7k
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Comment: C: checkVCF File "./checkVCF.py", line 67 errors
5.6 years ago by finswimmer 16k
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934
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Comment: C: Python code for extracting values from an Excel database?
5.6 years ago by finswimmer 16k
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2.3k
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Comment: C: Fail to generate .bai index with samtools
updated 5.6 years ago by 44k • written 5.6 years ago by 16k
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3.9k
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Comment: C: filter unique variants from multiple VCF files
5.6 years ago by finswimmer 16k
1
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1
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2.0k
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Answer: A: Finding if dbSNP type in biomart
5.6 years ago by finswimmer 16k
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3.9k
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Comment: C: filter unique variants from multiple VCF files
5.6 years ago by finswimmer 16k
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1
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3.9k
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Answer: Answer: filter unique variants from multiple VCF files
5.6 years ago by finswimmer 16k
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1.1k
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Comment: C: How can I see the low frequency SNP
5.6 years ago by finswimmer 16k
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837
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Answer: A: How to Deduplicate files
5.6 years ago by finswimmer 16k
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1.3k
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Comment: C: How to pivot pandas dataframe?
5.6 years ago by finswimmer 16k
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1.3k
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Answer: C: How to pivot pandas dataframe?
5.6 years ago by finswimmer 16k
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1.2k
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Comment: C: IGV - identification of sequencing errors
5.6 years ago by finswimmer 16k
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4.7k
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Comment: C: Do you know some way to remove the stop codons in an alignment and replace the s
5.6 years ago by finswimmer 16k
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1
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5.0k
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Comment: C: Aligning Multiple paired end files together
5.6 years ago by finswimmer 16k
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5.7k
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Comment: C: Extracting CIGAR string from a specific region of a read in a bam file using pys
5.6 years ago by finswimmer 16k
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1
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1.3k
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Comment: C: little discrepancies gnomAD DB vs. website
5.6 years ago by finswimmer 16k
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1
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5.2k
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Answer: A: How to extract entire info column from VCF file using bcftools
5.6 years ago by finswimmer 16k
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1
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1.6k
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Comment: C: compare two columns of two files
5.6 years ago by finswimmer 16k
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1
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1.5k
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
5.6 years ago by finswimmer 16k
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1
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1.5k
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
5.6 years ago by finswimmer 16k
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1
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1.6k
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Comment: C: call haplotypes in GATK HaplotypeCaller
5.6 years ago by finswimmer 16k
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2.4k
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Answer: A: Want to loop through list of BLAST objects in python
5.6 years ago by finswimmer 16k
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2
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2.4k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
5.6 years ago by finswimmer 16k
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1
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8.7k
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Comment: C: grep command on VCF
5.6 years ago by finswimmer 16k
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1
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2.9k
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Comment: C: Edit score column in bed file
5.6 years ago by finswimmer 16k
1
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1
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7.6k
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Comment: C: GATK4.1.1.0---HaplotypeCaller :HaplotypeCallerEngine - Disabling physical phasin
5.6 years ago by finswimmer 16k
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2
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3.2k
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Comment: C: How to turn current VCF into a VCF with genotype and rsID in same file
5.7 years ago by finswimmer 16k
1
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0
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2.3k
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Comment: C: bcftools FORMAT/FOO annotation to specific sample in multiple sample VCF
5.7 years ago by finswimmer 16k
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1
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3.2k
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Comment: C: How to turn current VCF into a VCF with genotype and rsID in same file
5.7 years ago by finswimmer 16k
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0
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2.6k
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Comment: C: GATK4: an error with VariantRecalibrator
5.7 years ago by finswimmer 16k
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1
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2.7k
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Comment: C: How to filter fastq paired-end reads based on Per Tile Sequence Quality
5.7 years ago by finswimmer 16k
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0
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878
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Comment: C: How to retrieve cDNA sequences from EMBL for a large number of accessions?
5.7 years ago by finswimmer 16k
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1.4k
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Comment: C: I have a list of chromosomes, positions, gene ids, and transcript ids (from a ge
5.7 years ago by finswimmer 16k
1
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1
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1.4k
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Comment: C: I have a list of chromosomes, positions, gene ids, and transcript ids (from a ge
5.7 years ago by finswimmer 16k
2
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0
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881
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Answer: A: How to consider/get the g. positions for variants in introns?
5.7 years ago by finswimmer 16k
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1
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1.8k
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Comment: C: Bcftools Call method not detecting single nucleotide deletions?
5.7 years ago by finswimmer 16k
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1
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2.2k
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Comment: C: Approximately following the GATK recommended workflow for DNA sequence data, my
5.7 years ago by finswimmer 16k
1
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2
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3.4k
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Comment: C: Subsampling one bamfile multiple times?
5.7 years ago by finswimmer 16k
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1.4k
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Answer: A: Should I use the same reference indexing command of bwa for WGS and WES analysis
5.7 years ago by finswimmer 16k
1,610 results • Page 5 of 33
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