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Comment: C: How do you download the nt database for Kraken2?
3.9 years ago by DNAngel ▴ 250
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2
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8.3k
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Comment: C: How do you download the nt database for Kraken2?
3.9 years ago by DNAngel ▴ 250
0
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0
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1.1k
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Comment: C: What to do with mapped reads after assembly?
3.9 years ago by DNAngel ▴ 250
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2
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1.1k
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What to do with mapped reads after assembly?
Assembly annotation
3.9 years ago by DNAngel ▴ 250
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0
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1.7k
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Comment: C: Error when trying to convert BAM file to FASTQ.
3.9 years ago by DNAngel ▴ 250
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11
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1.7k
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Error when trying to convert BAM file to FASTQ.
samtools bedtools
3.9 years ago by DNAngel ▴ 250
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1
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1.7k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.9 years ago by DNAngel ▴ 250
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1
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1.7k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.9 years ago by DNAngel ▴ 250
0
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1
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1.7k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.9 years ago by DNAngel ▴ 250
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0
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1.7k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.9 years ago by DNAngel ▴ 250
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0
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2.0k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.9 years ago by DNAngel ▴ 250
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1
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2.0k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.9 years ago by DNAngel ▴ 250
0
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6
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2.0k
views
FastQC Per sequence GC count always fails after trimmomatic?
fastqc trimmomatic
updated 3.9 years ago by 148k • written 3.9 years ago by ▴ 250
0
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0
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2.0k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.9 years ago by DNAngel ▴ 250
0
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2
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8.3k
views
Comment: C: How do you download the nt database for Kraken2?
3.9 years ago by DNAngel ▴ 250
2
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13
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8.3k
views
How do you download the nt database for Kraken2?
Kraken2 nt
updated 3.9 years ago by 148k • written 3.9 years ago by ▴ 250
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0
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1.1k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.9 years ago by DNAngel ▴ 250
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0
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1.1k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.9 years ago by DNAngel ▴ 250
0
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1
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1.1k
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.9 years ago by DNAngel ▴ 250
0
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6
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1.1k
views
Papers/posts on best practises for dealing with Illumina reads?
assembly trimmomatic bwa-mem
updated 3.9 years ago by 86k • written 3.9 years ago by ▴ 250
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0
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653
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Comment: C: Determining if the number of significant results between two categories is signi
4.2 years ago by DNAngel ▴ 250
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2
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653
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Determining if the number of significant results between two categories is significantly different?
statistics
4.2 years ago by DNAngel ▴ 250
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0
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598
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How to know if it is missing a gene or assembly error?
BWA Assembly
updated 19 months ago by 44k • written 4.2 years ago by ▴ 250
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0
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591
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PAML sample size question and variation in results
PAML
4.2 years ago by DNAngel ▴ 250
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0
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1.1k
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Understanding PAML results between random-sites and clade model C.
PAML
4.2 years ago by DNAngel ▴ 250
2
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3
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2.0k
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How to parallelize bwa mem for single-end data within a larger bash script?
bash bwa-mem gnu-parallel
updated 5.2 years ago by 164k • written 5.2 years ago by ▴ 250
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0
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7.3k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
5.2 years ago by DNAngel ▴ 250
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0
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2.0k
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Comment: C: How to parallelize bwa mem for single-end data within a larger bash script?
5.2 years ago by DNAngel ▴ 250
0
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0
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2.6k
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Comment: C: How do you extract longest transcript from fasta file using length and header ID
5.2 years ago by DNAngel ▴ 250
2
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2
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2.6k
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How do you extract longest transcript from fasta file using length and header IDs?
awk fasta
updated 5.2 years ago by 13k • written 5.2 years ago by ▴ 250
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0
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13k
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Comment: C: Generate Consensus sequence from BAM file
5.2 years ago by DNAngel ▴ 250
2
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1
reply
1.9k
views
How to loop over a directory to set each file as a variable?
bash
5.2 years ago by DNAngel ▴ 250
1
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1
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1.8k
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Comment: C: Does Abyss work on single-end Illumina reads only?
5.2 years ago by DNAngel ▴ 250
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0
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1.8k
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Comment: C: Does Abyss work on single-end Illumina reads only?
5.2 years ago by DNAngel ▴ 250
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0
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1.8k
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Answer: A: How to get a VCF file for all variants in a specific gene and specific exon?
5.2 years ago by DNAngel ▴ 250
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0
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3.5k
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Comment: C: Split BAM into 1 BAM per contig
5.2 years ago by DNAngel ▴ 250
3
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7
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1.8k
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Does Abyss work on single-end Illumina reads only?
Abyss
updated 5.2 years ago by 8.3k • written 5.2 years ago by ▴ 250
0
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0
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2.5k
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Comment: C: How do you assemble contigs without using a reference genome?
5.2 years ago by DNAngel ▴ 250
0
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1
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2.5k
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Comment: C: How do you assemble contigs without using a reference genome?
5.2 years ago by DNAngel ▴ 250
0
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1
reply
10.0k
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Comment: C: How to generate contigs from bam alignment
5.2 years ago by DNAngel ▴ 250
0
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1
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2.5k
views
Comment: C: How do you assemble contigs without using a reference genome?
5.2 years ago by DNAngel ▴ 250
4
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6
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2.5k
views
How do you assemble contigs without using a reference genome?
assembly genome
updated 5.2 years ago by 35k • written 5.2 years ago by ▴ 250
0
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0
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2.6k
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Comment: C: What do you do after obtaining sorted bam files?
5.2 years ago by DNAngel ▴ 250
0
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1
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2.6k
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Comment: C: What do you do after obtaining sorted bam files?
5.2 years ago by DNAngel ▴ 250
1
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6
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2.6k
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What do you do after obtaining sorted bam files?
bwa bam
updated 5.2 years ago by 14k • written 5.3 years ago by ▴ 250
0
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0
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2.6k
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Comment: C: What do you do after obtaining sorted bam files?
5.2 years ago by DNAngel ▴ 250
0
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1
reply
2.8k
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Comment: C: gene annotation using BAM files
5.3 years ago by DNAngel ▴ 250
0
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0
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10k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
5.3 years ago by DNAngel ▴ 250
1
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0
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4.7k
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Answer: A: how to extract coding sequences (CDS) from a bam file or vcf file ?
5.3 years ago by DNAngel ▴ 250
0
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0
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4.7k
views
Comment: C: how to extract coding sequences (CDS) from a bam file or vcf file ?
5.3 years ago by DNAngel ▴ 250
203 results • Page 3 of 5
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