Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
10k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
5.3 years ago by DNAngel ▴ 250
0
votes
0
replies
16k
views
Comment: C: Reads Per Contig From Sam File?
5.3 years ago by DNAngel ▴ 250
0
votes
0
replies
853
views
How to obtain protein-coding sequences from assembled genome/exome dataset?
PAML bwa
5.3 years ago by DNAngel ▴ 250
0
votes
0
replies
4.9k
views
Comment: C: Too Many Genes Under Positive Selection
5.3 years ago by DNAngel ▴ 250
0
votes
0
replies
4.9k
views
Comment: C: Too Many Genes Under Positive Selection
5.3 years ago by DNAngel ▴ 250
0
votes
0
replies
741
views
How to test evolutionary rates for each species in a gene alignment?
evolutionary rate R
5.4 years ago by DNAngel ▴ 250
0
votes
0
replies
1.1k
views
R package to calculate ancestral state characters using maximum parsimony?
R maximum parsimony ancestral states
5.6 years ago by DNAngel ▴ 250
0
votes
2
replies
6.5k
views
Is there a tool to calculate sequence similarity of sequences in a MSA?
alignment DNA
5.6 years ago by DNAngel ▴ 250
0
votes
0
replies
1.1k
views
Theory question on dN/dS values for phylogeny
dNdS paml codeml
5.7 years ago by DNAngel ▴ 250
0
votes
1
reply
3.1k
views
Comment: C: Help with understanding PAML M0 output
5.7 years ago by DNAngel ▴ 250
0
votes
1
reply
3.1k
views
Comment: C: Help with understanding PAML M0 output
5.7 years ago by DNAngel ▴ 250
0
votes
1
reply
3.1k
views
Comment: C: Help with understanding PAML M0 output
5.7 years ago by DNAngel ▴ 250
1
vote
7
replies
3.1k
views
Help with understanding PAML M0 output
PAML M0
updated 5.7 years ago by ★ 2.1k • written 5.7 years ago by ▴ 250
5
votes
4
replies
2.9k
views
Does Whole Exome Sequencing Include Mitochondrial Genome??
mitogenome exome whole exome sequencing
updated 5.7 years ago by 22k • written 5.7 years ago by ▴ 250
0
votes
1
reply
1.4k
views
Comment: C: How to set up a reference file for BWA so that highly variable sites between con
5.8 years ago by DNAngel ▴ 250
0
votes
3
replies
1.4k
views
How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
bwa samtools
5.8 years ago by DNAngel ▴ 250
0
votes
0
replies
1.8k
views
Comment: C: How do you run codeml for two genes in one file but with 1 species tree?
5.8 years ago by DNAngel ▴ 250
0
votes
4
replies
1.8k
views
How do you run codeml for two genes in one file but with 1 species tree?
PAML codeml
updated 5.8 years ago by ★ 1.4k • written 5.8 years ago by ▴ 250
0
votes
0
replies
1.8k
views
Comment: C: How do you run codeml for two genes in one file but with 1 species tree?
5.8 years ago by DNAngel ▴ 250
0
votes
0
replies
5.4k
views
Comment: C: How to distinguish if a gene is a paralogue or an isoform?
5.9 years ago by DNAngel ▴ 250
8
votes
3
replies
5.4k
views
How to distinguish if a gene is a paralogue or an isoform?
paralogue isoform gene
updated 5.9 years ago by ★ 1.9k • written 5.9 years ago by ▴ 250
0
votes
1
reply
2.8k
views
Comment: C: Can BWA restart a calculation after a break?
5.9 years ago by DNAngel ▴ 250
0
votes
1
reply
2.8k
views
Comment: C: Can BWA restart a calculation after a break?
5.9 years ago by DNAngel ▴ 250
5
votes
9
replies
2.8k
views
Can BWA restart a calculation after a break?
bwa samtools
updated 5.9 years ago by 15k • written 5.9 years ago by ▴ 250
2
votes
1
reply
978
views
Do the lowercase bases seen in BAM files need to be reverse complemented in consensus?
BAM
updated 6.0 years ago by 105k • written 6.0 years ago by ▴ 250
0
votes
1
reply
9.2k
views
Comment: C: How to count the total aligned bases in BAM?
6.0 years ago by DNAngel ▴ 250
0
votes
0
replies
3.2k
views
Comment: A: How to create consensus from bam file without IUPAC code?
6.0 years ago by DNAngel ▴ 250
13
votes
16
replies
8.0k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa samtools mpileup
6.0 years ago by DNAngel ▴ 250
1
vote
0
replies
8.0k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
6.0 years ago by DNAngel ▴ 250
0
votes
0
replies
4.3k
views
Comment: C: Ngs Question ~ Consensus
6.0 years ago by DNAngel ▴ 250
0
votes
1
reply
8.0k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
6.0 years ago by DNAngel ▴ 250
0
votes
1
reply
8.0k
views
Comment: A: Confused about how to generate a consensus sequence after bwa
6.0 years ago by DNAngel ▴ 250
0
votes
0
replies
8.0k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
6.0 years ago by DNAngel ▴ 250
1
vote
2
replies
4.2k
views
Answer: A: How to save trimmomatic terminal summary to an output file?
updated 6.1 years ago by 44k • written 6.1 years ago by ▴ 250
7
votes
5
replies
4.2k
views
How to save trimmomatic terminal summary to an output file?
trimmomatic
6.1 years ago by DNAngel ▴ 250
0
votes
1
reply
1.8k
views
How do you make a tree file in R using a fasta MSA?
R
6.2 years ago by DNAngel ▴ 250
0
votes
2
replies
1.5k
views
How to keep a log of columns removed from edited MSA?
MEGA MSA Python
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 250
0
votes
0
replies
2.4k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
7.2 years ago by DNAngel ▴ 250
0
votes
2
replies
2.4k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
7.2 years ago by DNAngel ▴ 250
0
votes
0
replies
2.4k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
7.2 years ago by DNAngel ▴ 250
1
vote
7
replies
2.4k
views
makeblastdb.exe giving me an unclear error message when creating a database
blast
updated 7.2 years ago by 164k • written 7.2 years ago by ▴ 250
2
votes
1
reply
2.6k
views
How much does cleandata in PAML analysis remove?
PAML codeml cleandata
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 250
0
votes
0
replies
3.3k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
7.4 years ago by DNAngel ▴ 250
0
votes
11
replies
3.3k
views
Is there a way to do clustalo profile-profile alignment without adding gaps to first profile?
profile-profile alignment clustalo
7.4 years ago by DNAngel ▴ 250
0
votes
0
replies
3.3k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
7.4 years ago by DNAngel ▴ 250
0
votes
2
replies
3.3k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
7.4 years ago by DNAngel ▴ 250
0
votes
1
reply
3.3k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
7.4 years ago by DNAngel ▴ 250
0
votes
1
reply
3.3k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
7.4 years ago by DNAngel ▴ 250
0
votes
0
replies
3.2k
views
Comment: C: aligning two MSA
7.4 years ago by DNAngel ▴ 250
0
votes
0
replies
3.3k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
7.4 years ago by DNAngel ▴ 250
203 results • Page 4 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6