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STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
STAR GTF GRCh37 SJ.out RNA-Seq
updated 4.4 years ago by • 0 • written 6.9 years ago by ▴ 40
2
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4
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3.5k
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Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
limma voom RNA-Seq confounding
updated 5.6 years ago by ★ 7.7k • written 6.4 years ago by ▴ 40
0
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0
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1.4k
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
differential expression limma RNA-Seq filtering
updated 6.2 years ago by 20 • written 6.4 years ago by ▴ 40
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3.5k
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Comment: C: Building a biologically meaningful design matrix for limma/voom in a large RNASe
6.4 years ago by stefanos.bamopoulos ▴ 40
0
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5.4k
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Answer: A: How can I produce gene level quantification using Salmon pseudo-aligner?
6.4 years ago by stefanos.bamopoulos ▴ 40
2
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4
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3.5k
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Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
RNA-Seq DE limma splice junctions
updated 6.6 years ago by 20 • written 7.5 years ago by ▴ 40
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Comment: C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
7.5 years ago by stefanos.bamopoulos ▴ 40
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0
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2.8k
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Comment: C: Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
7.5 years ago by stefanos.bamopoulos ▴ 40
3
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4
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2.8k
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Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
RNA-Seq salmon GRCh37 Ensembl
updated 7.5 years ago by ▴ 150 • written 7.6 years ago by ▴ 40
0
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1
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3.5k
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Comment: C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
7.5 years ago by stefanos.bamopoulos ▴ 40
0
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1
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2.4k
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Comment: C: How to splice introne sequences for each transcript.
7.5 years ago by stefanos.bamopoulos ▴ 40
2
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0
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3.7k
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Answer: A: Help for finding the right FASTA file for kallisto
7.6 years ago by stefanos.bamopoulos ▴ 40
0
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0
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2.8k
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Comment: C: Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
7.6 years ago by stefanos.bamopoulos ▴ 40
0
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0
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3.5k
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Reference Transcriptome for hg19
RNA-Seq salmon transcriptome reference hg19
7.6 years ago by stefanos.bamopoulos ▴ 40
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