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1
vote
0
replies
150
views
CNV Analysis for single bulk RNA-Seq Sample
CNV RNA-Seq
updated 23 days ago by 44k • written 23 days ago by ▴ 190
1
vote
2
replies
729
views
Nextflow crash on AWS Batch with transition error
BWA Nextflow AWS
updated 9 months ago by ★ 2.3k • written 9 months ago by ▴ 190
0
votes
0
replies
904
views
Comment: Comment: CNV-calling single sample
10 months ago by hkarakurt ▴ 190
0
votes
1
reply
676
views
Comment: Comment: Transcript Based Annotation of Variants Using Annovar
11 months ago by hkarakurt ▴ 190
3
votes
4
replies
676
views
Transcript Based Annotation of Variants Using Annovar
Annovar SNV Transcript Variant
updated 11 months ago by ★ 3.0k • written 11 months ago by ▴ 190
0
votes
0
replies
969
views
Comment: Comment: 4 Fastq files for a single run generated by 10X
12 months ago by hkarakurt ▴ 190
2
votes
2
replies
969
views
4 Fastq files for a single run generated by 10X
scRNA-Seq Fastq SRA 10X
12 months ago by hkarakurt ▴ 190
0
votes
2
replies
583
views
Finding the Sequence of a Protein with Variant
WES Variant-Annotation WGS
updated 16 months ago by 44k • written 16 months ago by ▴ 190
4
votes
6
replies
1.9k
views
Using Specific Regions of Genome as Reference for Alignment Using STAR
RNA-Seq Alignment STAR
updated 2.1 years ago by ★ 2.4k • written 2.1 years ago by ▴ 190
0
votes
0
replies
1.9k
views
Comment: Comment: Using Specific Regions of Genome as Reference for Alignment Using STAR
2.1 years ago by hkarakurt ▴ 190
2
votes
2
replies
1.1k
views
Weighted gene regulatory networks
regulatory ChIP-Seq network
updated 2.2 years ago by ▴ 600 • written 4.5 years ago by ▴ 190
2
votes
1
reply
583
views
A method to find if a variant is Genomic or an RNA-Editing variant
Editing RNA-Seq WES RNA Variant
updated 2.3 years ago by 20k • written 2.3 years ago by ▴ 190
0
votes
0
replies
765
views
Inserting Junctions Into Genome after Indexing with STAR
splicing alternative Junctions STAR RNA-Seq
2.5 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.3k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.6 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.3k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.6 years ago by hkarakurt ▴ 190
0
votes
1
reply
2.3k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.6 years ago by hkarakurt ▴ 190
0
votes
1
reply
2.3k
views
Comment: Comment: Using DESeq2 as one sample vs. population
2.6 years ago by hkarakurt ▴ 190
4
votes
8
replies
2.3k
views
Using DESeq2 as one sample vs. population
expression differential test DESeq2 RNA-Seq one-sample
2.6 years ago by hkarakurt ▴ 190
0
votes
0
replies
782
views
Comment: Comment: Formula for Differential Expression Analysis of 2 conditions and 2 cell types
2.7 years ago by hkarakurt ▴ 190
5
votes
2
replies
782
views
Formula for Differential Expression Analysis of 2 conditions and 2 cell types
Differential edgeR Expression Formula RNA-Seq
2.7 years ago by hkarakurt ▴ 190
0
votes
0
replies
498
views
Prediction Tool for Pathogenicity of Alternatively Spliced Proteins
protein mRNA RNA-Seq splicing
2.9 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.8k
views
Comment: Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
3.1 years ago by hkarakurt ▴ 190
8
votes
5
replies
2.8k
views
Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
Variant Calling SNP MinION ONT
3.1 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.8k
views
Comment: Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
3.1 years ago by hkarakurt ▴ 190
2
votes
1
reply
3.6k
views
MinION Data Examples (FAST5) Database
ONT FAST5 MinION DNA
updated 3.3 years ago by 148k • written 3.3 years ago by ▴ 190
3
votes
1
reply
3.0k
views
Normalization and Batch Effect of bulk RNA-Seq
batch RNA-Seq correction normalization
updated 3.4 years ago by 14k • written 3.4 years ago by ▴ 190
0
votes
1
reply
1.0k
views
Multiple Transctipr ID (NM ) from MyVariantInfo
snp transcript dna-seq
updated 3.7 years ago by ▴ 670 • written 3.7 years ago by ▴ 190
1
vote
1
reply
735
views
Genomic Variant calling from RNA-Seq Data
RNA-Seq SNP Genomic Variant
updated 3.8 years ago by 88k • written 3.8 years ago by ▴ 190
30
votes
15
replies
22k
views
8 follow
Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
RNA-Seq R Seurat Monocle Pseudotime
updated 3.9 years ago by ▴ 120 • written 5.5 years ago by ▴ 190
0
votes
1
reply
1.1k
views
Comment: C: Optimal Number of SNPs in NA12878 WES Data
4.0 years ago by hkarakurt ▴ 190
0
votes
3
replies
1.1k
views
Optimal Number of SNPs in NA12878 WES Data
WES GATK SNP
4.0 years ago by hkarakurt ▴ 190
4
votes
3
replies
2.0k
views
Calculating GC content around a specific genomic location
WGS WES GC genome SNP
updated 4.0 years ago by 4.1k • written 4.0 years ago by ▴ 190
0
votes
0
replies
800
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq scRNA-Seq batch-effect
updated 7 months ago by 44k • written 4.0 years ago by ▴ 190
2
votes
1
reply
1.2k
views
Trimmomatic trims most of the reverse strand
fastq trim trimmomatic bwa
updated 4.2 years ago by 148k • written 4.2 years ago by ▴ 190
0
votes
0
replies
1.2k
views
Comment: C: SNPs on a single transcript of a gene with multiple transcripts
4.3 years ago by hkarakurt ▴ 190
3
votes
3
replies
1.2k
views
SNPs on a single transcript of a gene with multiple transcripts
WGS WES SNP Gene
updated 4.3 years ago by ★ 1.9k • written 4.3 years ago by ▴ 190
0
votes
1
reply
1.2k
views
Comment: C: Network Analysis of Each Cluster of Protein Interaction Network
4.4 years ago by hkarakurt ▴ 190
0
votes
0
replies
1.2k
views
Comment: C: Network Analysis of Each Cluster of Protein Interaction Network
4.4 years ago by hkarakurt ▴ 190
4
votes
5
replies
1.2k
views
Network Analysis of Each Cluster of Protein Interaction Network
R Python Network PPI
updated 4.4 years ago by ▴ 540 • written 4.4 years ago by ▴ 190
0
votes
0
replies
3.1k
views
Comment: C: Differential Expression Analysis of Two Groups Time Series Data with Limma
5.1 years ago by hkarakurt ▴ 190
1
vote
2
replies
3.1k
views
Differential Expression Analysis of Two Groups Time Series Data with Limma
limma microarray differential expression RNA-Seq
5.2 years ago by hkarakurt ▴ 190
0
votes
1
reply
4.5k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
5.2 years ago by hkarakurt ▴ 190
0
votes
1
reply
4.5k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
5.2 years ago by hkarakurt ▴ 190
0
votes
1
reply
4.5k
views
Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
5.2 years ago by hkarakurt ▴ 190
3
votes
8
replies
4.5k
views
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
fpkm scRNA-seq RNA-Seq tpm batch-effect
updated 7 months ago by 44k • written 5.2 years ago by ▴ 190
2
votes
1
reply
1.7k
views
Automatic Coloring for Each Node According to Names in Cytoscape
cytoscape network intercation
updated 5.4 years ago by ▴ 620 • written 5.4 years ago by ▴ 190
0
votes
1
reply
22k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
5.5 years ago by hkarakurt ▴ 190
0
votes
0
replies
22k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
5.5 years ago by hkarakurt ▴ 190
0
votes
1
reply
22k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
5.5 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.3k
views
Comment: C: Dunn Index for Clusters from scRNA-Seq
5.8 years ago by hkarakurt ▴ 190
92 results • Page 1 of 2
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