Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
2.3k
views
Comment: C: Dunn Index for Clusters from scRNA-Seq
5.8 years ago by hkarakurt ▴ 190
1
vote
5
replies
2.3k
views
Dunn Index for Clusters from scRNA-Seq
scRNA-Seq clustering dunn index scater scran
5.8 years ago by hkarakurt ▴ 190
0
votes
0
replies
3.6k
views
Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.8 years ago by hkarakurt ▴ 190
0
votes
1
reply
3.6k
views
Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.8 years ago by hkarakurt ▴ 190
5
votes
7
replies
3.6k
views
Differential Expression Analysis between conditions of single cell RNA-Seq
scRNA-Seq RNA-Seq differential expression analysis
5.8 years ago by hkarakurt ▴ 190
0
votes
1
reply
3.6k
views
Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.8 years ago by hkarakurt ▴ 190
14
votes
1
reply
10k
views
Mitochondrial Gene percentage threshold in single cell RNA-Seq
RNA-Seq scRNA-Seq mitochondrial genes
5.8 years ago by hkarakurt ▴ 190
1
vote
3
replies
1.5k
views
Enrichment Analysis with only GeneSymbols
RNA-Seq enrichment R scRNA-Seq
updated 5.8 years ago by ★ 1.9k • written 5.8 years ago by ▴ 190
0
votes
0
replies
1.5k
views
Comment: C: Enrichment Analysis with only GeneSymbols
5.8 years ago by hkarakurt ▴ 190
0
votes
1
reply
6.0k
views
Comment: C: How to increase point size or color palette of a PCA plot using the scater packa
5.8 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.6k
views
Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.8 years ago by hkarakurt ▴ 190
0
votes
1
reply
2.6k
views
Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.8 years ago by hkarakurt ▴ 190
2
votes
4
replies
2.6k
views
Silhouette Plots for Clustering Quality (Multiple Algorithm)
R Clustering RNA-Seq scRNA-Seq
5.9 years ago by hkarakurt ▴ 190
0
votes
1
reply
1.4k
views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
RNA-Seq single-cell R
6.2 years ago by hkarakurt ▴ 190
0
votes
2
replies
1.1k
views
Enrichment Tool for Mouse miRNAs
miRNA enrichment GO Analysis
6.4 years ago by hkarakurt ▴ 190
0
votes
1
reply
1.5k
views
Annotation File for Enchancer Regions in Ensembl mm10 genome
ChIP-Seq enhancer
6.4 years ago by hkarakurt ▴ 190
5
votes
2
replies
5.6k
views
Hisat2 or Bowtie2 for ChIP-Seq Data?
ChIP-Seq sequencing alignment
updated 6.5 years ago by 7.6k • written 6.5 years ago by ▴ 190
0
votes
1
reply
4.8k
views
Answer: A: Genes with promoter and enhancer regions as GTF
6.5 years ago by hkarakurt ▴ 190
7
votes
7
replies
4.8k
views
Genes with promoter and enhancer regions as GTF
ChIP-Seq featurecounts gtf promoter genes
updated 14 months ago by • 0 • written 6.5 years ago by ▴ 190
4
votes
5
replies
4.7k
views
Differential ChIP-Seq Analysis
ChIP-Seq R next-gen alignment
updated 6.6 years ago by 13k • written 6.6 years ago by ▴ 190
0
votes
0
replies
3.2k
views
Comment: C: How to extrach gene names and peaks from BedGraph or BigWig files
6.6 years ago by hkarakurt ▴ 190
0
votes
2
replies
3.2k
views
Comment: C: How to extrach gene names and peaks from BedGraph or BigWig files
6.6 years ago by hkarakurt ▴ 190
1
vote
5
replies
3.2k
views
How to extrach gene names and peaks from BedGraph or BigWig files
ChIP-Seq bedgraph bigwig peak
updated 6.6 years ago by 104k • written 6.6 years ago by ▴ 190
0
votes
0
replies
2.2k
views
Comment: C: Where to download Protein-Protein Interaction Network with Cost values (Or Calcu
6.7 years ago by hkarakurt ▴ 190
0
votes
1
reply
2.2k
views
Comment: C: Where to download Protein-Protein Interaction Network with Cost values (Or Calcu
6.7 years ago by hkarakurt ▴ 190
0
votes
4
replies
2.2k
views
Where to download Protein-Protein Interaction Network with Cost values (Or Calculate)?
String PPI Network
6.7 years ago by hkarakurt ▴ 190
1
vote
2
replies
3.2k
views
Differential Coexpression Analysis
coexpression microarray RNA-Seq network
6.8 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.3k
views
Comment: C: Deseq2 results have too many genes
6.8 years ago by hkarakurt ▴ 190
0
votes
0
replies
2.3k
views
Comment: C: Deseq2 results have too many genes
6.8 years ago by hkarakurt ▴ 190
0
votes
4
replies
2.3k
views
Deseq2 results have too many genes
Deseq2 RNA-Seq Differential Expression
updated 6.8 years ago by ▴ 340 • written 6.8 years ago by ▴ 190
2
votes
1
reply
1.6k
views
Example data to verify of RNA-Seq Analysis pipeline
hisat2 RNA-Seq pipeline
updated 21 months ago by 44k • written 6.9 years ago by ▴ 190
2
votes
1
reply
2.2k
views
Cufflinks gives only CUFF names with a gtf.
cufflinks RNA-Seq hisat2
updated 6.9 years ago by ★ 3.6k • written 6.9 years ago by ▴ 190
0
votes
1
reply
1.2k
views
Particle swarm or Ant Colony optimization of genome-scale metabolic model in Matlab
Matlab Optimization Metabolic Model
6.9 years ago by hkarakurt ▴ 190
0
votes
2
replies
1.4k
views
Significantly changed genes increase after Benjamini Hochberg correction
microarray matlab ttest fdr
7.1 years ago by hkarakurt ▴ 190
1
vote
1
reply
2.7k
views
Expression data extraction error. Logical result as expression matrix
geoquery bioconductor gse
updated 7.1 years ago by 27k • written 7.6 years ago by ▴ 190
0
votes
1
reply
12k
views
Comment: C: Retrieving data from NCBI GEO and RNA-Seq Data Analysis
7.3 years ago by hkarakurt ▴ 190
3
votes
6
replies
12k
views
Retrieving data from NCBI GEO and RNA-Seq Data Analysis
RNA-Seq R GEO Normalization Count
updated 14 months ago by ▴ 310 • written 7.3 years ago by ▴ 190
3
votes
2
replies
5.0k
views
Tool for predicting transcription factors from a gene list
transcription-factors gene
updated 19 months ago by 44k • written 7.6 years ago by ▴ 190
1
vote
1
reply
5.8k
views
How to extract expression data from RAW data.
raw expression
updated 7.6 years ago by 35k • written 7.6 years ago by ▴ 190
0
votes
1
reply
3.6k
views
Comment: C: Expression data preprocess and normalization
7.6 years ago by hkarakurt ▴ 190
0
votes
1
reply
3.6k
views
Comment: C: Expression data preprocess and normalization
7.6 years ago by hkarakurt ▴ 190
1
vote
5
replies
3.6k
views
Expression data preprocess and normalization
RNA-Seq Bioconductor R GEO GSE
7.6 years ago by hkarakurt ▴ 190
92 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6