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4
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0
replies
4.6k
views
Answer: A: Per Base Coverage
updated 5.3 years ago by 45k • written 13.3 years ago by 12k
0
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1
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11k
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Comment: C: bedtools intersect - something wrong with chromosome numbers >= 10?
updated 5.4 years ago by 45k • written 11.0 years ago by 12k
4
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1
reply
11k
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Answer: A: bedtools intersect - something wrong with chromosome numbers >= 10?
updated 5.4 years ago by 45k • written 11.0 years ago by 12k
21
votes
1
reply
86k
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Answer: A: Bedtools Compare Multiple Bed Files?
updated 5.4 years ago by 45k • written 13.6 years ago by 12k
56
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6
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86k
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Answer: A: Bedtools Compare Multiple Bed Files?
updated 5.4 years ago by 45k • written 13.6 years ago by 12k
1
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2
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9.1k
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Comment: C: bedtools: extracting no coverage regions
updated 5.5 years ago by 45k • written 11.1 years ago by 12k
6
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2
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9.1k
views
Answer: A: bedtools: extracting no coverage regions
updated 5.5 years ago by 45k • written 11.1 years ago by 12k
16
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0
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29k
views
Answer: A: Getting list of chromosome names from indexed BAM file
updated 5.5 years ago by 45k • written 11.1 years ago by 12k
3
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0
replies
9.1k
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Answer: A: Intersect multiple BED files
updated 5.5 years ago by 45k • written 9.4 years ago by 12k
2
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1
reply
6.5k
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Answer: A: Produce Bed File With Gaps In Coverage From A Bam File
updated 5.5 years ago by 45k • written 11.5 years ago by 12k
13
votes
1
reply
18k
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Answer: A: Binning Of Chromosome Data
updated 5.5 years ago by 45k • written 12.1 years ago by 12k
10
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1
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12k
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Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 12.4 years ago by 12k
4
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0
replies
12k
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Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 11.4 years ago by 12k
2
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1
reply
12k
views
Answer: Answer: Bedtools: Analyzing Genomic Features
updated 3.2 years ago by 45k • written 11.6 years ago by 12k
2
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0
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12k
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Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 10.7 years ago by 12k
1
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0
replies
12k
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Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 11.5 years ago by 12k
1
vote
0
replies
12k
views
Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 11.4 years ago by 12k
1
vote
0
replies
12k
views
Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 11.1 years ago by 12k
2
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0
replies
12k
views
Answer: A: Bedtools: Analyzing Genomic Features
updated 5.5 years ago by 45k • written 11.3 years ago by 12k
3
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0
replies
12k
views
Answer: Answer: Bedtools: Analyzing Genomic Features
updated 3.2 years ago by 45k • written 10.4 years ago by 12k
5
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1
reply
5.5k
views
Answer: A: Getting All Reads That Align To A Region In Compact Bed Format Using Bedtools?
updated 5.5 years ago by 45k • written 12.4 years ago by 12k
23
votes
1
reply
11k
views
Answer: A: ./ Vs "0/0" In Vcf Files
updated 5.5 years ago by 45k • written 13.1 years ago by 12k
13
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0
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33k
views
Answer: A: Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
updated 5.7 years ago by 45k • written 13.6 years ago by 12k
4
votes
0
replies
8.9k
views
Answer: A: How Can I Get All Coordinates With A Coverage Higher Than 5 Reads?
updated 5.7 years ago by 45k • written 11.6 years ago by 12k
0
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0
replies
8.5k
views
Comment: C: Interpreting "Intersectbed" Output
updated 5.7 years ago by 45k • written 13.3 years ago by 12k
0
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0
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8.4k
views
Comment: C: Softwares For Calculation Of Genome-Wide Alignments Coverage
updated 5.7 years ago by 45k • written 13.4 years ago by 12k
0
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0
replies
8.4k
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Comment: C: Softwares For Calculation Of Genome-Wide Alignments Coverage
updated 5.7 years ago by 45k • written 13.4 years ago by 12k
1
vote
0
replies
23k
views
Comment: C: Calculate Exon Coverage Using Samtools
updated 5.7 years ago by 45k • written 13.8 years ago by 12k
13
votes
0
replies
5.9k
views
Answer: A: How To Find The Nearest Gene To A Retrotransposon Insert?
updated 5.7 years ago by 45k • written 13.2 years ago by 12k
5
votes
3
replies
5.1k
views
Answer: A: Finding An Genomic Intervals Shared For A Given Individual As Called By Two Or M
updated 5.7 years ago by 45k • written 13.5 years ago by 12k
1
vote
1
reply
19k
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Comment: C: Extract Sequences From Fasta Using Awk One-Liner
updated 5.7 years ago by 45k • written 13.6 years ago by 12k
18
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5
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25k
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Answer: A: Bioinformatics "Cheat Sheet"
updated 5.8 years ago by 45k • written 14.2 years ago by 12k
0
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0
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14k
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Comment: C: How To Efficiently Remove Snps That Are Present In All Samples?
updated 5.8 years ago by 45k • written 14.2 years ago by 12k
7
votes
2
replies
100k
views
Answer: A: Selecting Random Pairs From Fastq?
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
0
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0
replies
100k
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Comment: C: Selecting Random Pairs From Fastq?
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
44
votes
13
replies
27k
views
Answer: A: What Are The Advantages/Disadvantages Of One-Based Vs. Zero-Based Genome Coordin
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
6
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0
replies
13k
views
Answer: A: How To Extract Specific Coordinates From Multifasta File
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
0
votes
0
replies
5.2k
views
Comment: C: Tracking The Version Of Third Party Tools Used
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
4
votes
3
replies
5.2k
views
Answer: A: Tracking The Version Of Third Party Tools Used
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
0
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0
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33k
views
Comment: C: How To Remove Certain Sequences From A Fasta File
updated 5.8 years ago by 45k • written 14.4 years ago by 12k
0
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0
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6.0k
views
Comment: C: Please Suggest Some Command-Line Tools For Displaying Abi Trace File On Windows
updated 5.8 years ago by 45k • written 14.3 years ago by 12k
4
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0
replies
7.9k
views
Answer: A: Dump Upstream Sequence
updated 5.8 years ago by 45k • written 13.8 years ago by 12k
0
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0
replies
42k
views
Comment: C: What Is The Quickest Algorithm For Range Overlap?
updated 5.8 years ago by 45k • written 10.4 years ago by 12k
13
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0
replies
42k
views
Answer: A: What Is The Quickest Algorithm For Range Overlap?
updated 5.8 years ago by 45k • written 14.8 years ago by 12k
11
votes
0
replies
185k
views
Comment: C: How Can I Convert Bam To Sam?
updated 5.8 years ago by 45k • written 13.9 years ago by 12k
12
votes
1
reply
20k
views
Answer: A: How Can I Split Bam Into Chromosome (In A Loop) Using Samtools?
updated 6.2 years ago by 45k • written 14.0 years ago by 12k
4
votes
0
replies
13k
views
Answer: A: The Longest Chromosome > Sizeof(Int32)
updated 6.4 years ago by 45k • written 13.7 years ago by 12k
17
votes
0
replies
55k
views
Answer: A: How To Split A Multiple Fasta
updated 6.6 years ago by 45k • written 14.8 years ago by 12k
2
votes
2
replies
22k
views
Answer: A: Code Golf: Digesting Fasta Sequences Into A Set Of Smaller Sequences
updated 6.8 years ago by 45k • written 14.9 years ago by 12k
18
votes
0
replies
9.6k
views
Answer: A: How Many Reads In A Bam File Are Aligned To An Arbitrary Region
updated 6.8 years ago by 45k • written 14.9 years ago by 12k
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