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Answer: Answer: How can I call somatic CNV in tumor and matched normal sample
10 weeks ago by jared.andrews07 ★ 18k
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273
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Answer: Answer: Tools for assigning putative enhacers to respective genes
10 weeks ago by jared.andrews07 ★ 18k
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723
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Comment: Comment: calling super enhancers
10 weeks ago by jared.andrews07 ★ 18k
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1
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585
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Comment: Comment: How can I call somatic CNV in tumor and matched normal sample
10 weeks ago by jared.andrews07 ★ 18k
1
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1
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723
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Comment: Comment: calling super enhancers
11 weeks ago by jared.andrews07 ★ 18k
1
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1
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723
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Comment: Comment: calling super enhancers
11 weeks ago by jared.andrews07 ★ 18k
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723
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Answer: Answer: Super ehancers calling
11 weeks ago by jared.andrews07 ★ 18k
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1.1k
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Comment: Comment: Transcriptome Improvement Using Cell Ranger Count vs. ARC for RNA-Seq Data from
11 weeks ago by jared.andrews07 ★ 18k
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1.1k
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Answer: Answer: Transcriptome Improvement Using Cell Ranger Count vs. ARC for RNA-Seq Data from
11 weeks ago by jared.andrews07 ★ 18k
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326
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Answer: Answer: Harmony integration of integarted samples
11 weeks ago by jared.andrews07 ★ 18k
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525
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
11 weeks ago by jared.andrews07 ★ 18k
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525
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
11 weeks ago by jared.andrews07 ★ 18k
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1
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525
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
11 weeks ago by jared.andrews07 ★ 18k
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0
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372
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Comment: Comment: Looking for some guidance regarding motif ontology
11 weeks ago by jared.andrews07 ★ 18k
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1
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372
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Answer: Answer: Looking for some guidance regarding motif ontology
12 weeks ago by jared.andrews07 ★ 18k
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860
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Comment: Comment: Seeking Advice: Best Network-based Backup Solutions (NAS or Alternatives) for a
12 weeks ago by jared.andrews07 ★ 18k
1
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0
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860
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Comment: Comment: Seeking Advice: Best Network-based Backup Solutions (NAS or Alternatives) for a
12 weeks ago by jared.andrews07 ★ 18k
1
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0
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213
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Comment: Comment: Overestimate of ATAC-seq differential peaks
12 weeks ago by jared.andrews07 ★ 18k
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1
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532
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Comment: Comment: CIBERSORTX disable quantile normalization
12 weeks ago by jared.andrews07 ★ 18k
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860
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Answer: Answer: Seeking Advice: Best Network-based Backup Solutions (NAS or Alternatives) for a
12 weeks ago by jared.andrews07 ★ 18k
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16k
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Comment: Comment: Associating VDJ clonotyping data with scRNA-seq in Seurat
12 weeks ago by jared.andrews07 ★ 18k
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23
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16k
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11 follow
Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
single-cell RNA-Seq seurat TCR
updated 12 weeks ago by • 0 • written 5.5 years ago by ★ 18k
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1
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628
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Comment: Comment: Trying to understand basic DiffBind usage
3 months ago by jared.andrews07 ★ 18k
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0
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806
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Comment: Comment: High Detection of Duplication in RNAseq dataset
3 months ago by jared.andrews07 ★ 18k
2
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1
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628
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Answer: Answer: Trying to understand basic DiffBind usage
3 months ago by jared.andrews07 ★ 18k
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2
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2.3k
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Comment: Comment: Is there anyone who downloaded Azimuth packges?
3 months ago by jared.andrews07 ★ 18k
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0
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1.3k
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Comment: Comment: ROSE called super-enhancers overlapping with promoters
3 months ago by jared.andrews07 ★ 18k
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2
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1.3k
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Comment: Comment: DEseq2 on expected counts
3 months ago by jared.andrews07 ★ 18k
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1
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2.1k
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Comment: Comment: How get density plot TSS region for genes of interest
3 months ago by jared.andrews07 ★ 18k
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1
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1.3k
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Comment: Comment: DEseq2 on expected counts
3 months ago by jared.andrews07 ★ 18k
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499
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Comment: Comment: Pcoa plot
3 months ago by jared.andrews07 ★ 18k
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499
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Comment: Comment: Pcoa plot
4 months ago by jared.andrews07 ★ 18k
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0
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343
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Answer: Answer: Creating a signature matrix using CibersortX
4 months ago by jared.andrews07 ★ 18k
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0
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1.2k
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Comment: Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
4 months ago by jared.andrews07 ★ 18k
1
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0
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1.2k
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Comment: Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
4 months ago by jared.andrews07 ★ 18k
0
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1
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1.2k
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Comment: Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
4 months ago by jared.andrews07 ★ 18k
0
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0
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433
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Comment: Comment: Approaches to validate hits from CRISPR-screen in mice
4 months ago by jared.andrews07 ★ 18k
1
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2
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1.2k
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
4 months ago by jared.andrews07 ★ 18k
0
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0
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1.2k
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Comment: Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
4 months ago by jared.andrews07 ★ 18k
0
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1
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433
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Answer: Answer: Approaches to validate hits from CRISPR-screen in mice
4 months ago by jared.andrews07 ★ 18k
1
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0
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15k
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Comment: Comment: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
4 months ago by jared.andrews07 ★ 18k
2
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391
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Answer: Answer: Is ComBat not able to to handle only two batches? What are good alternatives?
4 months ago by jared.andrews07 ★ 18k
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1
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644
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Comment: Comment: DESeq2 results vs. shrinkage results
4 months ago by jared.andrews07 ★ 18k
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1
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848
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Comment: Comment: Grammar of Graphics for Heatmap
4 months ago by jared.andrews07 ★ 18k
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0
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545
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Comment: Comment: Percentage Problem
4 months ago by jared.andrews07 ★ 18k
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1
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545
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Answer: Answer: Percentage Problem
4 months ago by jared.andrews07 ★ 18k
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0
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447
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Answer: Answer: Suggestions for resource for running R training
4 months ago by jared.andrews07 ★ 18k
2
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1
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518
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Answer: Answer: Why Are There Differences in RNA-seq Results?
5 months ago by jared.andrews07 ★ 18k
1
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0
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670
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Comment: Comment: Mageck RRA is listing negative controls as high fold change in the gene summary
5 months ago by jared.andrews07 ★ 18k
1
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1
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670
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Answer: Answer: Mageck RRA is listing negative controls as high fold change in the gene summary
5 months ago by jared.andrews07 ★ 18k
1,590 results • Page 2 of 32
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