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685
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
5 months ago by jared.andrews07 ★ 18k
0
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0
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527
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Comment: Comment: error in CIBERSORTx
5 months ago by jared.andrews07 ★ 18k
1
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0
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354
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Answer: Answer: Differential expression bias in Seurat
5 months ago by jared.andrews07 ★ 18k
1
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0
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443
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Comment: Comment: single cell RNA sequencing and mitochondrial percent
5 months ago by jared.andrews07 ★ 18k
0
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1
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848
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Comment: Comment: How to identify cell identities in mixed scRNA-seq using mutational signatures f
5 months ago by jared.andrews07 ★ 18k
2
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1
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848
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Answer: Answer: How to identify cell identities in mixed scRNA-seq using mutational signatures f
5 months ago by jared.andrews07 ★ 18k
2
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1
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442
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Answer: Answer: Understanding dimred in scater for scRNASeq
5 months ago by jared.andrews07 ★ 18k
2
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1
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887
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Answer: Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
5 months ago by jared.andrews07 ★ 18k
0
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0
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646
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Comment: Comment: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
5 months ago by jared.andrews07 ★ 18k
0
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0
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646
views
Comment: Comment: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
5 months ago by jared.andrews07 ★ 18k
2
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1
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646
views
Answer: Answer: DESeq2_ How to Account for the Expression Levels of a Specific Gene?
5 months ago by jared.andrews07 ★ 18k
0
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0
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944
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Answer: Answer: How to find transcription factors list?
5 months ago by jared.andrews07 ★ 18k
1
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0
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684
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Answer: Answer: Seurat object with multiple PCAs/UMAPs from different assays
6 months ago by jared.andrews07 ★ 18k
0
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0
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619
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Comment: Comment: Is there a common acceptance criteria for sample contamination?
6 months ago by jared.andrews07 ★ 18k
1
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0
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953
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Comment: Comment: Pseudobulking per patient
6 months ago by jared.andrews07 ★ 18k
0
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0
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556
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Answer: Answer: gProfiler vs Panther_go in overrepresentation pathways R analysis
6 months ago by jared.andrews07 ★ 18k
1
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1
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953
views
Answer: Answer: Pseudobulking per patient
6 months ago by jared.andrews07 ★ 18k
0
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1
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619
views
Comment: Comment: Is there a common acceptance criteria for sample contamination?
6 months ago by jared.andrews07 ★ 18k
0
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0
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622
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Answer: Answer: InferCNV results interpretation
6 months ago by jared.andrews07 ★ 18k
0
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1
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761
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Comment: Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
6 months ago by jared.andrews07 ★ 18k
0
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1
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761
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Answer: Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
6 months ago by jared.andrews07 ★ 18k
0
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0
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544
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Answer: Answer: Facing problem with single cell rna seq annotation using singleR
updated 6 months ago by 44k • written 6 months ago by ★ 18k
0
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0
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1.4k
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Comment: Comment: Harmony integration group.by.var parameter
6 months ago by jared.andrews07 ★ 18k
1
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1
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1.4k
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Comment: Comment: Harmony integration group.by.var parameter
6 months ago by jared.andrews07 ★ 18k
1
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2
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1.4k
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Answer: Answer: Harmony integration group.by.var parameter
6 months ago by jared.andrews07 ★ 18k
0
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1
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439
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Answer: Answer: Trying to understand warning from MACS2 about too few paired peaks and differing
6 months ago by jared.andrews07 ★ 18k
1
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0
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1.1k
views
Answer: Answer: Mouse or Rat Gene Expression Data Similar to GTEx
6 months ago by jared.andrews07 ★ 18k
2
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0
replies
1.1k
views
Comment: Comment: Super ehancers
6 months ago by jared.andrews07 ★ 18k
1
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1
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1.1k
views
Comment: Comment: Super ehancers
6 months ago by jared.andrews07 ★ 18k
0
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0
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637
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Comment: Comment: Using ggplotly in R
7 months ago by jared.andrews07 ★ 18k
1
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1
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637
views
Answer: Answer: Using ggplotly in R
7 months ago by jared.andrews07 ★ 18k
12
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1
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721
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Answer: Answer: TFs and Gene databases
7 months ago by jared.andrews07 ★ 18k
0
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0
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604
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Answer: Answer: DiffBind: no peaks in DBA
7 months ago by jared.andrews07 ★ 18k
2
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1
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1.1k
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Answer: Answer: Super ehancers
7 months ago by jared.andrews07 ★ 18k
0
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0
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1.7k
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Answer: Answer: What purposes can TPM values be used for?
7 months ago by jared.andrews07 ★ 18k
1
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0
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568
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Comment: Comment: Visualize pathways from MSigDB
8 months ago by jared.andrews07 ★ 18k
2
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1
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568
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Answer: Answer: Visualize pathways from MSigDB
8 months ago by jared.andrews07 ★ 18k
3
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1
reply
780
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Comment: Comment: Seeking Help with Unexpected MA Plot Output
8 months ago by jared.andrews07 ★ 18k
0
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1
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497
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Answer: Answer: Update R in Posit Workbench
8 months ago by jared.andrews07 ★ 18k
0
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0
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434
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Comment: Comment: MACS3 or SEACR
8 months ago by jared.andrews07 ★ 18k
0
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0
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508
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Comment: Comment: AUTODOCK TOOLS ERRO
8 months ago by jared.andrews07 ★ 18k
1
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0
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339
views
Answer: Answer: Seeking for edgeR TMM Normalization calcul example
8 months ago by jared.andrews07 ★ 18k
2
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0
replies
1.1k
views
Comment: Comment: I need a consultation about my workflow.
8 months ago by jared.andrews07 ★ 18k
0
votes
1
reply
945
views
Answer: Answer: Error when trying to install R package 'scater'
8 months ago by jared.andrews07 ★ 18k
1
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0
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384
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Answer: Answer: Seurat 5 integration
8 months ago by jared.andrews07 ★ 18k
0
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0
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2.3k
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Comment: Comment: Bioinformatics career transition
9 months ago by jared.andrews07 ★ 18k
0
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0
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390
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Comment: Comment: Pathway activity in Bulk-RNA-SEQ analysis
9 months ago by jared.andrews07 ★ 18k
2
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1
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2.3k
views
Answer: Answer: Bioinformatics career transition
9 months ago by jared.andrews07 ★ 18k
0
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0
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831
views
Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
9 months ago by jared.andrews07 ★ 18k
1
vote
0
replies
562
views
Answer: Answer: quality control scRNAseq
9 months ago by jared.andrews07 ★ 18k
1,590 results • Page 3 of 32
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