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Comment:
Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
13 months ago by
jared.andrews07
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
DiffBind
csaw
normalization
spikein
ChIPseq
13 months ago by
jared.andrews07
★ 18k
2
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1
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1.4k
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Answer:
Answer: Doheatmap in seurat
13 months ago by
jared.andrews07
★ 18k
2
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1
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637
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Answer:
Answer: DepMap Portal
13 months ago by
jared.andrews07
★ 18k
1
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2.0k
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Answer:
Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
13 months ago by
jared.andrews07
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0
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0
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860
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Comment:
Comment: macs2 output r file not generated
13 months ago by
jared.andrews07
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2
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860
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Answer:
Answer: macs2 output r file not generated
14 months ago by
jared.andrews07
★ 18k
0
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0
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751
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Answer:
Answer: Visium data analysis software supporting deconvolution analysis
14 months ago by
jared.andrews07
★ 18k
0
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0
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494
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Comment:
Comment: I'm doing RNA seq but the quality control sequence GC contens shape looks weird.
14 months ago by
jared.andrews07
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3
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1
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1.8k
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Answer:
Answer: Mentor for a beginner bioinformatics student
14 months ago by
jared.andrews07
★ 18k
0
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0
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826
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Comment:
Comment: 2 dimensional quadrant plot
14 months ago by
jared.andrews07
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1
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2.2k
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Comment:
Comment: ROSE Algorithm: index out of range
14 months ago by
jared.andrews07
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9.0k
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Comment:
Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
14 months ago by
jared.andrews07
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1
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9.0k
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Comment:
Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
14 months ago by
jared.andrews07
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9.0k
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Comment:
Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
14 months ago by
jared.andrews07
★ 18k
1
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0
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802
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Comment:
Comment: Chip-Seq and correlation of bam file
14 months ago by
jared.andrews07
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2
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1
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802
views
Answer:
Answer: Chip-Seq and correlation of bam file
14 months ago by
jared.andrews07
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1
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0
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475
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Answer:
Answer: Transcription factor co-localization p-values
14 months ago by
jared.andrews07
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0
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0
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1.3k
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Comment:
Comment: Filter human transcription factors
14 months ago by
jared.andrews07
★ 18k
6
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3
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1.3k
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Answer:
Answer: Filter transcription factors
14 months ago by
jared.andrews07
★ 18k
0
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0
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2.0k
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Comment:
Comment: scRNAseq Differential expression analysis
14 months ago by
jared.andrews07
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0
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1
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919
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Answer:
Answer: GSEA Result Visualization in R
14 months ago by
jared.andrews07
★ 18k
9
votes
1
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4.3k
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Comment:
Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
15 months ago by
jared.andrews07
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1
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1
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1.3k
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Comment:
Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
15 months ago by
jared.andrews07
★ 18k
0
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1
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1.3k
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Comment:
Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
15 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
1.0k
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Answer:
Answer: trajectory-like graph for a data frame
15 months ago by
jared.andrews07
★ 18k
1
vote
1
reply
3.4k
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Comment:
Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
15 months ago by
jared.andrews07
★ 18k
1
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1
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1.1k
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Comment:
Comment: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
15 months ago by
jared.andrews07
★ 18k
0
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1
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1.1k
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Answer:
Answer: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
15 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
1.7k
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Comment:
Comment: Cluster annotation in single cell
15 months ago by
jared.andrews07
★ 18k
1
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1
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1.9k
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Comment:
Comment: How to remove the gene label in heatmap RNA-seq
15 months ago by
jared.andrews07
★ 18k
3
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1
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1.9k
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Answer:
Answer: How to remove the gene label in heatmap RNA-seq
15 months ago by
jared.andrews07
★ 18k
1
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1
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723
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Answer:
Answer: how to filter the scRNAseq data, by percent genes expression, counts and others
15 months ago by
jared.andrews07
★ 18k
0
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1
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1.4k
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Comment:
Comment: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
15 months ago by
jared.andrews07
★ 18k
1
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1
reply
2.0k
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Comment:
Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
15 months ago by
jared.andrews07
★ 18k
1
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0
replies
1.5k
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Comment:
Comment: R based query about making pairwise matrix
15 months ago by
jared.andrews07
★ 18k
4
votes
0
replies
1.5k
views
Answer:
Answer: R based query about making pairwise matrix
15 months ago by
jared.andrews07
★ 18k
1
vote
2
replies
1.4k
views
Answer:
Answer: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
15 months ago by
jared.andrews07
★ 18k
1
vote
1
reply
4.9k
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Answer:
Answer: InferCNV results interpretation
15 months ago by
jared.andrews07
★ 18k
2
votes
2
replies
2.0k
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Answer:
Answer: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 15 months ago by
Ram
44k • written 15 months ago by
jared.andrews07
★ 18k
0
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0
replies
1.5k
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Comment:
Comment: open source projects looking for contributors
15 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
1.5k
views
Comment:
Comment: open source projects looking for contributors
15 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
497
views
Answer:
Answer: DESeq2 design formula for time - condition - donor
15 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
2.0k
views
Comment:
Comment: Differential Expression using Isoseq-supplemented reference transcriptome
15 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
2.0k
views
Comment:
Comment: Problems using ERCC spike-ins for normalization in DESeq2
15 months ago by
jared.andrews07
★ 18k
0
votes
0
replies
1.9k
views
Answer:
Answer: Is Bioinformatics a Professional Degree?
15 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
1.5k
views
Comment:
Comment: open source projects looking for contributors
15 months ago by
jared.andrews07
★ 18k
1
vote
0
replies
1.2k
views
Comment:
Comment: Biostar as a next generation version
15 months ago by
jared.andrews07
★ 18k
0
votes
1
reply
1.2k
views
Answer:
Answer: A cluster expresses two types of cells' markers in scRNA-seq
15 months ago by
jared.andrews07
★ 18k
4
votes
2
replies
2.0k
views
Answer:
Answer: Problems using ERCC spike-ins for normalization in DESeq2
15 months ago by
jared.andrews07
★ 18k
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