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Comment: Comment: ExomeDepth installation error
20 months ago by jared.andrews07 ★ 18k
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2.0k
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Answer: Answer: ExomeDepth installation error
20 months ago by jared.andrews07 ★ 18k
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0
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751
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Comment: Comment: Databases for cell lines
21 months ago by jared.andrews07 ★ 18k
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780
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News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
21 months ago by jared.andrews07 ★ 18k
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780
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Answer: Answer: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15t
21 months ago by jared.andrews07 ★ 18k
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0
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Answer: Answer: If using singeR return more clusters than available ones should I do reclusterin
21 months ago by jared.andrews07 ★ 18k
3
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1
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646
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Answer: Answer: How to quantify the reads of each peak for ChIP-seq data?
21 months ago by jared.andrews07 ★ 18k
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843
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Answer: Answer: How to quantify the reads of peaks?
21 months ago by jared.andrews07 ★ 18k
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1.2k
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Answer: Answer: Can FPKM data sets be of any use or are they trash?
21 months ago by jared.andrews07 ★ 18k
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958
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Comment: Comment: Error in measuring percentage of mit.genes
21 months ago by jared.andrews07 ★ 18k
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1.5k
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Answer: Answer: Use single cell sequencing bam file to tell if a patient has a mutation
21 months ago by jared.andrews07 ★ 18k
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2.1k
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Comment: Comment: RDS file in Rstudio
22 months ago by jared.andrews07 ★ 18k
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1.7k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
22 months ago by jared.andrews07 ★ 18k
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1.7k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
22 months ago by jared.andrews07 ★ 18k
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0
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1.7k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
22 months ago by jared.andrews07 ★ 18k
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0
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546
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Answer: Answer: Pearson correlation coefficients of histone modifications at specific region
22 months ago by jared.andrews07 ★ 18k
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0
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548
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Comment: Comment: How do I edit chromosome names or delete some chromosomes in assembly (FASTA) an
22 months ago by jared.andrews07 ★ 18k
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1.3k
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Answer: Answer: singleR annotation shows overlapping clusters
22 months ago by jared.andrews07 ★ 18k
2
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607
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Answer: Answer: Normalizing chip-seq signals with different number of peaks
22 months ago by jared.andrews07 ★ 18k
2
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1.3k
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Answer: Answer: extracting input files form Seurat
22 months ago by jared.andrews07 ★ 18k
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674
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Answer: Answer: Do I need to correct for sequencing depth in bulk RNA seq?
22 months ago by jared.andrews07 ★ 18k
2
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1.2k
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Answer: Answer: Processed RNA seq data publicly available
23 months ago by jared.andrews07 ★ 18k
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1.2k
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Answer: Answer: What is the best way to convert gene symbols into ensembl and other ids in Pytho
23 months ago by jared.andrews07 ★ 18k
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1.8k
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Comment: Comment: How do I subset data in R with a list of variable names?
23 months ago by jared.andrews07 ★ 18k
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1
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1.8k
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Answer: Answer: How do I subset data in R with a list of variable names?
23 months ago by jared.andrews07 ★ 18k
1
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1
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5.3k
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Comment: Comment: CUT&Tag data processing: peak caller choice and typical peak size profile
24 months ago by jared.andrews07 ★ 18k
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2
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5.3k
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Comment: Comment: CUT&Tag data processing: peak caller choice and typical peak size profile
24 months ago by jared.andrews07 ★ 18k
2
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0
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588
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Answer: Answer: General questions concerning mathylation analysis
24 months ago by jared.andrews07 ★ 18k
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5.3k
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Comment: Comment: CUT&Tag data processing: peak caller choice and typical peak size profile
24 months ago by jared.andrews07 ★ 18k
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3
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5.3k
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Answer: Answer: CUT&Tag data processing: peak caller choice and typical peak size profile
24 months ago by jared.andrews07 ★ 18k
2
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0
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756
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Answer: Answer: Analyzing time-series RNA-seq data using DEseq2
24 months ago by jared.andrews07 ★ 18k
2
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2
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1.7k
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Answer: Answer: How to interpret the nine-square plot from mageckFlute
2.0 years ago by jared.andrews07 ★ 18k
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0
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2.2k
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Comment: Comment: How do I know if I'm overcorrecting my single cell data
2.1 years ago by jared.andrews07 ★ 18k
2
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0
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795
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Answer: Answer: ENCODE peaks files - do I use the IDR files?
2.1 years ago by jared.andrews07 ★ 18k
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0
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1.8k
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Answer: Answer: EdgeR installation in Mac 1 Pro (M1 chip) using Studio
2.1 years ago by jared.andrews07 ★ 18k
3
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1
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1.4k
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Answer: Answer: Subsetting DGEList object for for a list of genes of interest
2.1 years ago by jared.andrews07 ★ 18k
3
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0
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3.2k
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Answer: Answer: How to resolve conda package conflicts when I try to build an environment for NL
2.1 years ago by jared.andrews07 ★ 18k
1
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1
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2.2k
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Answer: Answer: How do I know if I'm overcorrecting my single cell data
2.1 years ago by jared.andrews07 ★ 18k
3
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1
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2.8k
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Answer: Answer: Searching for a way to plot Seurat style equivalent dotplot for gene expression
2.1 years ago by jared.andrews07 ★ 18k
0
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0
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665
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Answer: Answer: Adjusting batch effects for known cell types and applying this transformation to
2.1 years ago by jared.andrews07 ★ 18k
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0
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563
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Comment: Comment: Error using methylumi.bgcorr for processing of Illumina array data
2.1 years ago by jared.andrews07 ★ 18k
2
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1
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2.1k
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Answer: Answer: How to open/work with wig or tdf files
2.1 years ago by jared.andrews07 ★ 18k
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0
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1.4k
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Comment: Comment: Exon counts do not match gene and transcript counts
2.1 years ago by jared.andrews07 ★ 18k
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1
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2.0k
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Comment: Comment: No DEGs (adjP 0.99) but GSEA has significant adj p values and enriched pathways
2.2 years ago by jared.andrews07 ★ 18k
4
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1
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2.0k
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Answer: Answer: No DEGs (adjP 0.99) but GSEA has significant adj p values and enriched pathways
2.2 years ago by jared.andrews07 ★ 18k
0
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1
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2.1k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
2.2 years ago by jared.andrews07 ★ 18k
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1
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2.1k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
2.2 years ago by jared.andrews07 ★ 18k
2
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1
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2.1k
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Answer: Answer: mouse+human cells in 10x scRNA-seq
2.2 years ago by jared.andrews07 ★ 18k
0
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1
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615
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Comment: Comment: moving .txt file to desktop
2.2 years ago by jared.andrews07 ★ 18k
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0
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1.8k
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Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
2.2 years ago by jared.andrews07 ★ 18k
1,590 results • Page 7 of 32
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