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3
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1
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1.8k
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Comment: Comment: Same results in Limma Toptable as in DESEQ2 results
2.2 years ago by jared.andrews07 ★ 18k
1
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0
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2.3k
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Answer: Answer: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
2.2 years ago by jared.andrews07 ★ 18k
0
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1
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1.2k
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Answer: Answer: Help with plotting DEG-specific heatmap
2.2 years ago by jared.andrews07 ★ 18k
0
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1
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890
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Comment: Comment: How to shade columns for dataframe in ggplot that has 2 dataframes?
2.2 years ago by jared.andrews07 ★ 18k
3
votes
1
reply
691
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Answer: Answer: Why we perform coldata dataframe in normalization with DESeq2 on R?
2.2 years ago by jared.andrews07 ★ 18k
1
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0
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3.6k
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Comment: Comment: Commercial software for genomics / NGS / bioinformatics
2.3 years ago by jared.andrews07 ★ 18k
1
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0
replies
1.4k
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Comment: Comment: Number of cells in each clusters
2.3 years ago by jared.andrews07 ★ 18k
1
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1
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1.4k
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Answer: Answer: Number of cells in each clusters
2.3 years ago by jared.andrews07 ★ 18k
1
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1
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1.8k
views
Comment: Comment: Obtaining p-value and fold-change from a table
2.3 years ago by jared.andrews07 ★ 18k
3
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1
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1.8k
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Answer: Answer: Obtaining p-value and fold-change from a table
2.3 years ago by jared.andrews07 ★ 18k
0
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1
reply
1.9k
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Answer: Answer: Normalize Bimodal Distribution
2.3 years ago by jared.andrews07 ★ 18k
2
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1
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1.2k
views
Answer: Answer: Relative log expression normalization without negative values
2.3 years ago by jared.andrews07 ★ 18k
2
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0
replies
2.6k
views
Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
2.4 years ago by jared.andrews07 ★ 18k
4
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1
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2.6k
views
Answer: Answer: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
2.4 years ago by jared.andrews07 ★ 18k
0
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1
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2.2k
views
Comment: Comment: DESeq2 dds Creation
2.4 years ago by jared.andrews07 ★ 18k
1
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2
replies
1.4k
views
Comment: Comment: STARsolo detected only one gene and Features.tsv file is empty
2.4 years ago by jared.andrews07 ★ 18k
1
vote
0
replies
890
views
Answer: Answer: Clustering analysis for scRNA-seq
2.4 years ago by jared.andrews07 ★ 18k
1
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1
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973
views
Comment: Comment: Error in DiffBind
2.4 years ago by jared.andrews07 ★ 18k
1
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1
reply
4.5k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
2.4 years ago by jared.andrews07 ★ 18k
0
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0
replies
1.1k
views
Comment: Comment: Logfold change
2.4 years ago by jared.andrews07 ★ 18k
1
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2
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1.1k
views
Answer: Answer: Logfold change
2.4 years ago by jared.andrews07 ★ 18k
0
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0
replies
1.3k
views
Comment: Comment: Exploring batch effects in RNA-seq data with plotPCA
2.4 years ago by jared.andrews07 ★ 18k
1
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1
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1.3k
views
Answer: Answer: Exploring batch effects in RNA-seq data with plotPCA
2.4 years ago by jared.andrews07 ★ 18k
1
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0
replies
1.7k
views
Answer: Answer: RNA-seq Heatmaps based off pathways
2.4 years ago by jared.andrews07 ★ 18k
0
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0
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1.3k
views
Comment: Comment: interpretation of CNVKIT plot
2.4 years ago by jared.andrews07 ★ 18k
3
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1
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3.3k
views
Answer: Answer: What is the command to download GTF from NCBI
2.5 years ago by jared.andrews07 ★ 18k
1
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0
replies
536
views
Answer: Answer: How to do differential expressions in R from scRNAseq count files after scaling
2.5 years ago by jared.andrews07 ★ 18k
0
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1
reply
1.3k
views
Answer: Answer: interpretation of CNVKIT plot
2.5 years ago by jared.andrews07 ★ 18k
0
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0
replies
1.9k
views
Comment: Comment: analyzing a single cell and searching for a specific gene using single cell data
2.5 years ago by jared.andrews07 ★ 18k
0
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0
replies
1.9k
views
Answer: Answer: analyzing a single cell and searching for a specific gene using single cell data
2.5 years ago by jared.andrews07 ★ 18k
0
votes
0
replies
9.1k
views
Comment: Comment: Gene ID mapping of Ensembl IDs
2.5 years ago by jared.andrews07 ★ 18k
1
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1
reply
9.1k
views
Comment: Comment: Gene ID mapping of Ensembl IDs
2.5 years ago by jared.andrews07 ★ 18k
1
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1
reply
1.3k
views
Answer: Answer: comparisons between 2 ChIP-seq datasets
2.6 years ago by jared.andrews07 ★ 18k
1
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0
replies
4.2k
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Comment: Comment: Combining multiple 10x scRNAseq datasets
2.6 years ago by jared.andrews07 ★ 18k
1
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0
replies
1.1k
views
Answer: Answer: Project ideas
2.6 years ago by jared.andrews07 ★ 18k
0
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0
replies
1.0k
views
Comment: Comment: InteractiveComplexHeatmap on DESeq2 object with more than 2 groups
2.6 years ago by jared.andrews07 ★ 18k
0
votes
0
replies
723
views
Answer: Answer: Enrichment analysis and GSEA
2.6 years ago by jared.andrews07 ★ 18k
1
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0
replies
1.4k
views
Answer: Answer: can i take promoter upstream 2kb from tss ?
2.6 years ago by jared.andrews07 ★ 18k
0
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1
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1.0k
views
Answer: Answer: InteractiveComplexHeatmap on DESeq2 object with more than 2 groups
2.6 years ago by jared.andrews07 ★ 18k
1
vote
1
reply
896
views
Answer: Answer: Sailfish - No <install_dir>/bin folder after installation
2.6 years ago by jared.andrews07 ★ 18k
2
votes
0
replies
1.5k
views
Answer: Answer: How to normalize bulk and scRNA-seq data in order to compare them
2.6 years ago by jared.andrews07 ★ 18k
1
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1
reply
4.1k
views
Comment: Comment: TMM or TPM for RNA sequence differential gene expression analysis
2.6 years ago by jared.andrews07 ★ 18k
0
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1
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4.1k
views
Comment: Comment: TMM or TPM for RNA sequence differential gene expression analysis
2.6 years ago by jared.andrews07 ★ 18k
0
votes
0
replies
2.4k
views
Comment: Comment: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
2.6 years ago by jared.andrews07 ★ 18k
1
vote
0
replies
2.4k
views
Comment: Comment: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
2.6 years ago by jared.andrews07 ★ 18k
2
votes
2
replies
2.4k
views
Answer: Answer: Loading possorted_genome_bam.bam generated by 10X cellranger count command into
2.6 years ago by jared.andrews07 ★ 18k
1
vote
0
replies
2.0k
views
Comment: Comment: Help with massive SRA download of mixed file types (SE fastq, PE fastq, bam)
2.6 years ago by jared.andrews07 ★ 18k
0
votes
0
replies
2.0k
views
Comment: Comment: Help with massive SRA download of mixed file types (SE fastq, PE fastq, bam)
2.6 years ago by jared.andrews07 ★ 18k
0
votes
2
replies
2.0k
views
Answer: Answer: Help with massive SRA download of mixed file types (SE fastq, PE fastq, bam)
2.6 years ago by jared.andrews07 ★ 18k
3
votes
0
replies
749
views
Answer: Answer: Why does DiffBind use the count of reads that fall within peaks?
2.7 years ago by jared.andrews07 ★ 18k
1,590 results • Page 8 of 32
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