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2
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Comment: Comment: samtools tview symbols
updated 2.1 years ago by 44k • written 9.4 years ago by 7.4k
2
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1
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7.9k
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Comment: Comment: pysam: filtering reads based on flag
updated 2.1 years ago by 44k • written 9.4 years ago by 7.4k
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Comment: Comment: Fastq reads mapped to the desired position on reference genome
updated 2.1 years ago by 44k • written 9.4 years ago by 7.4k
3
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0
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2.0k
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Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 2.1 years ago by 44k • written 9.4 years ago by 7.4k
10
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5
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2.7k
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Forum: What are your "model" examples for bioinformatics programming?
github RNA-Seq
updated 20 months ago by 44k • written 9.4 years ago by 7.4k
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5.6k
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Comment: C: MiSeq Analysis Beginner: First steps after getting MiSeq paired end data
9.4 years ago by Dan D 7.4k
1
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0
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2.5k
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Job: Computational Biologist - Work with me at HudsonAlpha in Huntsville, USA
ngs
updated 24 months ago by 44k • written 9.4 years ago by 7.4k
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1
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5.9k
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Comment: C: flagstats results show 0.0 % properly paired reads
9.4 years ago by Dan D 7.4k
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1
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4.5k
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Comment: C: Would you buy a BGI/ CompleGenomics Revolocity (X10 competitor)?
9.5 years ago by Dan D 7.4k
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6.2k
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Answer: Answer: gVCF from VCF and BAM
updated 23 months ago by 44k • written 9.5 years ago by 7.4k
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0
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1.7k
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Comment: C: Fastq size: Why don't we have nucleotide information merged to quality scores?
9.5 years ago by Dan D 7.4k
4
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3
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6.9k
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Answer: A: How to ignore bases with bcl2fastq2 --use-bases-mask
9.5 years ago by Dan D 7.4k
1
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0
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27k
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Comment: Comment: Marking and Removing duplicates using picard (picard-tools-1.129)
updated 23 months ago by 44k • written 9.5 years ago by 7.4k
0
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1
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27k
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Comment: C: Marking and Removing duplicates using picard (picard-tools-1.129)
9.5 years ago by Dan D 7.4k
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0
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8.7k
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Comment: Comment: Best bioinfo one-liners?
updated 23 months ago by 44k • written 9.5 years ago by 7.4k
3
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1
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2.7k
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Answer: Answer: Can I always use Galaxy?
updated 22 months ago by 44k • written 9.5 years ago by 7.4k
3
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0
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4.3k
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Answer: Answer: sequence in forward seq files but not in the reverse files
updated 22 months ago by 44k • written 9.5 years ago by 7.4k
0
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0
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4.3k
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Comment: C: sequence in forward seq files but not in the reverse files
9.5 years ago by Dan D 7.4k
0
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0
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3.8k
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Comment: Comment: using GenomeCoverageBed tool
updated 22 months ago by 44k • written 9.5 years ago by 7.4k
4
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0
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8.2k
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Answer: Answer: Filtering Stream Bam Output Idealy From Pysam/Python
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
1
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2
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3.8k
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Answer: Answer: using GenomeCoverageBed tool
updated 22 months ago by 44k • written 9.6 years ago by 7.4k
3
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1
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6.4k
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Answer: A: Is Smith Waterman ever used?
9.6 years ago by Dan D 7.4k
0
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0
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5.8k
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Answer: Answer: What are acceptable SNP QUAL and GQ thresholds to filter on?
updated 22 months ago by 44k • written 9.6 years ago by 7.4k
0
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1
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19k
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Comment: C: Extract fasta sequences from a large file using a list of names
9.6 years ago by Dan D 7.4k
1
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1
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5.9k
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Comment: C: Is there any program to manually draw gene clusters?
9.6 years ago by Dan D 7.4k
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0
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2.8k
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Comment: C: Is there any aligner which supports soft clipping a fixed number of bases from r
9.6 years ago by Dan D 7.4k
8
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2
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2.8k
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Is there any aligner which supports soft clipping a fixed number of bases from reads prior to alignment?
alignment soft-clipping
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
0
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0
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2.7k
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Comment: C: Illumina RTA interop parser
9.6 years ago by Dan D 7.4k
0
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1
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6.9k
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Comment: C: Mark duplicates for single end reads: Why only 5'end?
9.6 years ago by Dan D 7.4k
0
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0
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16k
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Comment: C: Demultiplexing fastq files with dual barcodes
9.6 years ago by Dan D 7.4k
1
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2
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5.9k
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Comment: Comment: bedtools getfasta does not give a proper fasta output
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
0
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0
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2.8k
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Answer: Answer: Illumina CASAVA runParameters.xml
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
0
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1
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13k
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Comment: C: Converting ION torrent .BAM to Fastq
9.6 years ago by Dan D 7.4k
1
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1
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5.1k
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Answer: A: How to use my own genome on UCSC browser?
9.6 years ago by Dan D 7.4k
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0
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12k
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Comment: C: How to subset a bed or gtf file to some genes of interest?
9.6 years ago by Dan D 7.4k
9
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2
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12k
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Answer: C: How to subset a bed or gtf file to some genes of interest?
9.6 years ago by Dan D 7.4k
1
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1
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2.9k
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Comment: C: How to calculate pairwise ts/tv ratio given a alignment
9.6 years ago by Dan D 7.4k
1
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0
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7.5k
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Comment: C: Optimal design for bioinformatics "lab" space?
9.6 years ago by Dan D 7.4k
5
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2
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7.5k
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Answer: A: Optimal design for bioinformatics "lab" space?
9.6 years ago by Dan D 7.4k
0
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0
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1.9k
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Comment: C: Fail to map after clip adaptor
9.6 years ago by Dan D 7.4k
0
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1
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2.9k
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Comment: C: Extract 6mer and headers from fasta and compile into list
9.6 years ago by Dan D 7.4k
3
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1
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2.9k
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Answer: Answer: Extract 6mer and headers from fasta and compile into list
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
2
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1
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1.9k
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Comment: C: Fail to map after clip adaptor
9.6 years ago by Dan D 7.4k
4
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2
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3.7k
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Answer: Answer: Which is better for job opportunities: Metagenomics OR Plant biotechnology
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
0
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1
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1.6k
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Answer: Answer: number of refseq genes of dog
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
2
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0
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3.7k
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Answer: Answer: picard Hs metrics and MarkDuplicates
updated 2.4 years ago by 44k • written 9.6 years ago by 7.4k
0
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1
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2.1k
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Comment: C: possible bug: can make minia run forever with a bogus FASTA
9.7 years ago by Dan D 7.4k
0
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0
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4.3k
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Comment: C: Proteins without genes ? Is that even possible ?
9.7 years ago by Dan D 7.4k
1
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1
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4.3k
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Comment: Comment: Proteins without genes ? Is that even possible ?
updated 2.5 years ago by 44k • written 9.7 years ago by 7.4k
0
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0
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1.9k
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Answer: Answer: how to calculate elment compostion of fasta protein file using biojava?
updated 2.5 years ago by 44k • written 9.7 years ago by 7.4k
607 results • Page 5 of 13
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