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Comment: C: s. start and s.end in tabular BLAST output are the wrong way around?
7.6 years ago by rmartson • 0
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s. start and s.end in tabular BLAST output are the wrong way around?
blast biopython
updated 3.9 years ago by ▴ 220 • written 7.6 years ago by • 0
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Comment: C: Are the UCSC genome assemblies non-redundant? How do I get a non-redundant genom
7.6 years ago by rmartson • 0
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Are the UCSC genome assemblies non-redundant? How do I get a non-redundant genome fasta?
genome ucsc blast
7.6 years ago by rmartson • 0
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
7.6 years ago by rmartson • 0
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
7.6 years ago by rmartson • 0
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
7.6 years ago by rmartson • 0
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NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
biopython blast
7.6 years ago by rmartson • 0
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
7.6 years ago by rmartson • 0
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Comment: C: Need to extract sequences from genome fasta (SeqIO object) into output file usin
7.6 years ago by rmartson • 0
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Need to extract sequences from genome fasta (SeqIO object) into output file using for loop. How do I return to the start of the genome with every ite…
Biopython blast
updated 7.6 years ago by ★ 3.5k • written 7.6 years ago by • 0
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Comment: C: Can I get BLAST results from commandline BLAST+ in complete and aligned FASTA fo
7.6 years ago by rmartson • 0
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Can I get BLAST results from commandline BLAST+ in complete and aligned FASTA format?
biopython blast
7.6 years ago by rmartson • 0
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Code for retrieving hit count from tabular BLAST format (outfmt=7 on Biopython) not working
biopython blast
7.6 years ago by rmartson • 0
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Comment: C: (Resolved) Code for retrieving hit count from tabular BLAST format (outfmt=7 on
7.6 years ago by rmartson • 0
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Answer: A: (Resolved) Code for retrieving hit count from tabular BLAST format (outfmt=7 on
7.6 years ago by rmartson • 0
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Comment: C: (Resolved) Code for retrieving hit count from tabular BLAST format (outfmt=7 on
7.6 years ago by rmartson • 0
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3
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Trying to check if a query id appears in tabular blast output but not getting any positives even for IDs I know are in the file?
biopython blast
7.6 years ago by rmartson • 0
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2.3k
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Comment: C: Trying to check if a query id appears in tabular blast output but not getting an
7.6 years ago by rmartson • 0
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2.3k
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Comment: C: Trying to check if a query id appears in tabular blast output but not getting an
7.6 years ago by rmartson • 0
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Comment: C: Database for local BLAST and BLAT for 200-1000bp query sequences in human and pr
7.6 years ago by rmartson • 0
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3.0k
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Comment: C: Database for local BLAST and BLAT for 200-1000bp query sequences in human and pr
7.6 years ago by rmartson • 0
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3.0k
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Comment: C: Database for local BLAST and BLAT for 200-1000bp query sequences in human and pr
7.6 years ago by rmartson • 0
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