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1
vote
3
replies
873
views
How to obtain genomic coordinates of novel transcripts?
ensembldb r
updated 2.8 years ago by 87k • written 2.8 years ago by ▴ 60
0
votes
0
replies
534
views
How to extract MAF block regions that have full alignment?
species multiple alignment python
3.1 years ago by nattzy94 ▴ 60
0
votes
1
reply
3.1k
views
Comment: Comment: blastp Error: NCBI C++ Exception: ncbi::CObject::ThrowNullPointerException() - A
3.3 years ago by nattzy94 ▴ 60
1
vote
3
replies
3.1k
views
blastp Error: NCBI C++ Exception: ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL pointer
blast
updated 3.3 years ago by 149k • written 3.3 years ago by ▴ 60
0
votes
0
replies
840
views
Error when running Stringtie Merge: Error getting header ID# for gseq 1
assembly stringtie
4.2 years ago by nattzy94 ▴ 60
0
votes
1
reply
754
views
Problem with long EBSeq runtime
RNA-Seq ebseq
4.4 years ago by nattzy94 ▴ 60
0
votes
0
replies
1.4k
views
Answer: A: Error when using snakemake with RSEM
4.5 years ago by nattzy94 ▴ 60
0
votes
1
reply
1.4k
views
Error when using snakemake with RSEM
RNA-Seq snakemake
4.5 years ago by nattzy94 ▴ 60
0
votes
2
replies
1.2k
views
Comment: C: How to do a DGE analysis of a list of 1000 genes of interest?
4.7 years ago by nattzy94 ▴ 60
6
votes
6
replies
1.2k
views
How to do a DGE analysis of a list of 1000 genes of interest?
RNA-Seq R
4.7 years ago by nattzy94 ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: Gffcompare issue: 0 reference transcripts loaded
4.7 years ago by nattzy94 ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: Gffcompare issue: 0 reference transcripts loaded
4.7 years ago by nattzy94 ▴ 60
0
votes
4
replies
1.4k
views
Gffcompare issue: 0 reference transcripts loaded
Assembly
4.7 years ago by nattzy94 ▴ 60
0
votes
0
replies
550
views
Checking workflow for assembly of time series expt using Stringtie-Ballgown
RNA-Seq assembly
4.7 years ago by nattzy94 ▴ 60
2
votes
1
reply
1.9k
views
StringTie merge GTF results in large increase in number of transcripts
RNA-Seq Assembly
updated 4.8 years ago by 89k • written 4.8 years ago by ▴ 60
0
votes
0
replies
792
views
Comment: C: Need help to generate custom MS database using CustomProDB?
4.8 years ago by nattzy94 ▴ 60
0
votes
2
replies
792
views
Need help to generate custom MS database using CustomProDB?
R proteomics
4.8 years ago by nattzy94 ▴ 60
0
votes
1
reply
939
views
Mass Spec: How to get unmatched MS spectra?
proteomics mass spec
4.8 years ago by nattzy94 ▴ 60
0
votes
2
replies
1.4k
views
Annotating an assembled GTF file
RNA-Seq Assembly
updated 4.8 years ago by • 0 • written 4.8 years ago by ▴ 60
3
votes
9
replies
2.5k
views
Problem trying to convert from .gtf to .fasta file
RNA-Seq bash
updated 4.9 years ago by ▴ 10 • written 5.0 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: How to input variable into pubmed -esearch function
5.0 years ago by nattzy94 ▴ 60
0
votes
2
replies
1.3k
views
How to input variable into pubmed -esearch function
bash pubmed
5.0 years ago by nattzy94 ▴ 60
1
vote
0
replies
2.5k
views
Comment: C: Problem trying to convert from .gtf to .fasta file
5.0 years ago by nattzy94 ▴ 60
0
votes
1
reply
2.5k
views
Comment: C: Problem trying to convert from .gtf to .fasta file
5.0 years ago by nattzy94 ▴ 60
0
votes
0
replies
2.5k
views
Comment: C: Problem trying to convert from .gtf to .fasta file
5.0 years ago by nattzy94 ▴ 60
0
votes
3
replies
1.4k
views
How to annotate gene list using enrichr?
RNA-Seq gene annotation
updated 5.1 years ago by 89k • written 5.2 years ago by ▴ 60
0
votes
0
replies
2.5k
views
Answer: A: How to solve: fgsea returns empty dataframe
5.2 years ago by nattzy94 ▴ 60
0
votes
1
reply
2.5k
views
How to solve: fgsea returns empty dataframe
gsea R fgsea
5.2 years ago by nattzy94 ▴ 60
2
votes
5
replies
1.9k
views
Help with converting gene symbols to gene IDs
R gsea
updated 5.2 years ago by ★ 2.0k • written 5.2 years ago by ▴ 60
0
votes
1
reply
1.9k
views
Comment: C: Help with converting gene symbols to gene IDs
5.2 years ago by nattzy94 ▴ 60
0
votes
0
replies
1.4k
views
Comment: A: How to annotate gene list using enrichr?
5.2 years ago by nattzy94 ▴ 60
0
votes
0
replies
788
views
Normalizing DNA sequencing reads using DNA spike in [sanity check]
sequencing
5.7 years ago by nattzy94 ▴ 60
0
votes
8
replies
2.0k
views
Having trouble using wildcard
shell loop command line
updated 5.9 years ago by 55k • written 5.9 years ago by ▴ 60
0
votes
1
reply
2.0k
views
Comment: C: Having trouble using wildcard
5.9 years ago by nattzy94 ▴ 60
0
votes
0
replies
2.0k
views
Comment: C: Having trouble using wildcard
5.9 years ago by nattzy94 ▴ 60
0
votes
0
replies
1.9k
views
Comment: C: How to Align to multiple reference genomes -> Discard multiply mapped reads?
5.9 years ago by nattzy94 ▴ 60
0
votes
2
replies
1.9k
views
How to Align to multiple reference genomes -> Discard multiply mapped reads?
bwa cmd alignment
updated 5.9 years ago by 35k • written 5.9 years ago by ▴ 60
9
votes
27
replies
8.8k
views
How do I use Glimmer 3.02?
sequencing
updated 6.1 years ago by • 0 • written 6.9 years ago by ▴ 60
0
votes
1
reply
1.1k
views
How to run Bracken on windows?
sequencing
6.1 years ago by nattzy94 ▴ 60
0
votes
0
replies
8.8k
views
Comment: C: How do I use Glimmer 3.02?
6.9 years ago by nattzy94 ▴ 60
0
votes
1
reply
8.8k
views
Comment: C: How do I use Glimmer 3.02?
6.9 years ago by nattzy94 ▴ 60
0
votes
1
reply
8.8k
views
Comment: C: How do I use Glimmer 3.02?
6.9 years ago by nattzy94 ▴ 60
0
votes
1
reply
8.8k
views
Comment: C: How do I use Glimmer 3.02?
6.9 years ago by nattzy94 ▴ 60
0
votes
1
reply
8.8k
views
Comment: C: How do I use Glimmer 3.02?
6.9 years ago by nattzy94 ▴ 60
0
votes
0
replies
3.2k
views
Comment: C: How to compare the similarity of a dataset against a larger dataset and plot a h
7.5 years ago by nattzy94 ▴ 60
0
votes
1
reply
3.2k
views
Comment: C: How to compare the similarity of a dataset against a larger dataset and plot a h
7.5 years ago by nattzy94 ▴ 60
0
votes
7
replies
3.2k
views
How to compare the similarity of a dataset against a larger dataset and plot a heat map?
heat map R
updated 7.5 years ago by ▴ 360 • written 7.5 years ago by ▴ 60
0
votes
1
reply
6.0k
views
"Error: 1: Space required after the Public Identifier 2: SystemLiteral " or ' expected" when running PubMedWorcloud
R
updated 7.5 years ago by 44k • written 7.5 years ago by ▴ 60
3
votes
16
replies
3.5k
views
How to map SNPs of C. Albicans using custom data?
R snp
7.5 years ago by nattzy94 ▴ 60
0
votes
1
reply
3.5k
views
Answer: A: How to map SNPs of C. Albicans using custom data?
7.5 years ago by nattzy94 ▴ 60
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