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Answer: A: Can I run ENCODE ChIP-Seq pipeline or get their code?
7.7 years ago by GouthamAtla 12k
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Answer: Answer: How can CAGE and RNA-Seq data complement each other?
updated 2.2 years ago by 44k • written 9.3 years ago by 12k
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5.4k
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Answer: A: CAGE seq & RNA-seq
7.7 years ago by GouthamAtla 12k
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Answer: C: Regulatory feature to gene annotation
7.7 years ago by GouthamAtla 12k
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Comment: C: Does MACS2 or MACS14 perform total reads normalization?
7.7 years ago by GouthamAtla 12k
6
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6.7k
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Answer: A: What does "gappedPeak" mean
7.7 years ago by GouthamAtla 12k
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4.9k
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Comment: C: BioStar's List of Predatory Journals and Publishers to Avoid - Spring Cleaning 2
7.7 years ago by GouthamAtla 12k
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1.6k
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Answer: A: Benchmark papers for Chip genomic enrichment
7.8 years ago by GouthamAtla 12k
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Answer: A: A possible script request for a task probably cannot be done in Excel
7.8 years ago by GouthamAtla 12k
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15k
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Comment: C: How To Get A List Of All Correlated Snps (In Ld) With Another List Of Snps?
7.8 years ago by GouthamAtla 12k
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Comment: C: Determine promoter regions relative to TSS.
7.8 years ago by GouthamAtla 12k
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4.6k
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Comment: C: Peak center for ATAC-seq data
7.8 years ago by GouthamAtla 12k
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2.7k
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Comment: C: 3' UTR sequence
7.8 years ago by GouthamAtla 12k
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Answer: C: Identification of SNPs in regulatory regions
7.8 years ago by GouthamAtla 12k
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1.4k
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Comment: C: Need help : gene with highest number of high quality SNPs in reference genome.
7.8 years ago by GouthamAtla 12k
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1.4k
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Answer: A: Need help : gene with highest number of high quality SNPs in reference genome.
7.8 years ago by GouthamAtla 12k
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2.7k
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Answer: C: 3' UTR sequence
7.8 years ago by GouthamAtla 12k
2
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1
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4.4k
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Answer: A: Extracting 200bp flanking sequence around a snp using Bedtools
7.8 years ago by GouthamAtla 12k
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4.3k
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Answer: A: The right pipline with cufflinks, cuffmerge and cuffdiff
7.8 years ago by GouthamAtla 12k
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2
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6.8k
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Tutorial: Troubleshooting issues with SURPI pipeline for pathogen identification from complex metagenomic NGS data.
metagenomics clinical-genomics
updated 2.8 years ago by 44k • written 10.1 years ago by 12k
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Answer: A: Softwares for Bacterial/Viral Classification from RNAseq
7.8 years ago by GouthamAtla 12k
2
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1
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4.6k
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Answer: A: Warning: Could not find FASTA file /home/praveenkumarr/rice_default/bwt/genome/g
7.8 years ago by GouthamAtla 12k
5
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3
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8.6k
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Answer: A: Plot heatmap of differentially expressed genes identified by DESeq2 a R coding p
7.9 years ago by GouthamAtla 12k
2
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1
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1.8k
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Answer: A: intersect snp and exon coordinates
7.9 years ago by GouthamAtla 12k
2
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2.5k
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Answer: A: extract out intronic sequences from genome fasta file
7.9 years ago by GouthamAtla 12k
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4.1k
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Comment: C: Short Blast with Gaps
7.9 years ago by GouthamAtla 12k
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1
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2.5k
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Comment: C: RNA-Seq expression analysis of heterogeneous data (cancer+healthy cells)
7.9 years ago by GouthamAtla 12k
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0
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5.3k
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Comment: C: HT-seq Counts Very High Number of No Feature
7.9 years ago by GouthamAtla 12k
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1
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2.5k
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Comment: C: PyVCF is giving 'AttributeError' when extracting values from FORMAT and SAMPLE c
7.9 years ago by GouthamAtla 12k
3
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4.2k
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Answer: A: samtools/sed for editing bam file
7.9 years ago by GouthamAtla 12k
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8.9k
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Comment: C: importing .SAM files into R (Rstudio)
7.9 years ago by GouthamAtla 12k
4
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1
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8.9k
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Answer: A: importing .SAM files into R (Rstudio)
7.9 years ago by GouthamAtla 12k
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3
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5.3k
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Comment: C: HT-seq Counts Very High Number of No Feature
7.9 years ago by GouthamAtla 12k
4
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2
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5.3k
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Answer: C: HT-seq Counts Very High Number of No Feature
7.9 years ago by GouthamAtla 12k
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3.2k
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Answer: A: Annotating Trinity transcriptome assembly with BLAST
7.9 years ago by GouthamAtla 12k
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9.8k
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Comment: C: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in
7.9 years ago by GouthamAtla 12k
0
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1
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9.8k
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Comment: C: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in
7.9 years ago by GouthamAtla 12k
0
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0
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9.8k
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Comment: C: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in
7.9 years ago by GouthamAtla 12k
9
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1
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9.8k
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Comment: C: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in
7.9 years ago by GouthamAtla 12k
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2.4k
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Answer: C: How to get the normalized counts matrix
7.9 years ago by GouthamAtla 12k
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1.4k
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Comment: C: What are all the different methods available for identifying the DEG?
7.9 years ago by GouthamAtla 12k
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3.7k
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Comment: C: how to plot heat map
7.9 years ago by GouthamAtla 12k
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2
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2.9k
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Comment: C: Use enrichr enrichment from command line
7.9 years ago by GouthamAtla 12k
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
7.9 years ago by GouthamAtla 12k
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8.7k
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Comment: C: Differential Peak Expression in ATAC-seq data
8.0 years ago by GouthamAtla 12k
1
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1
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2.9k
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Comment: C: Motif discovery using MEME
8.0 years ago by GouthamAtla 12k
2
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1
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4.1k
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Answer: C: HTSeq not counting all the fragments it should count on a gene
8.0 years ago by GouthamAtla 12k
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1
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4.3k
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Comment: C: WGCNA lncRNA-mrna interaction
8.0 years ago by GouthamAtla 12k
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4.3k
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Comment: C: WGCNA lncRNA-mrna interaction
8.0 years ago by GouthamAtla 12k
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2.3k
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Comment: C: the most frequent isoform of each gene specific to the cell line
8.0 years ago by GouthamAtla 12k
1,490 results • Page 11 of 30
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