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Mapping difference with BWA
variant-calling samtools bam BWA genomics
updated 6 months ago by 85k • written 6 months ago by ▴ 10
1
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1
reply
344
views
geom_bar issue in ggplot2 with xlim()
geom_bar ggplot2 statistics R
updated 6 months ago by 85k • written 6 months ago by ▴ 10
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3
replies
687
views
How to identify gaps in a genome?
awk seqkit assembly fasta genome
updated 7 months ago by 7.0k • written 7 months ago by ▴ 10
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0
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687
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Comment: Comment: How to identify gaps in a genome?
7 months ago by rj.rezwan ▴ 10
3
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1
reply
404
views
how to change the gene header names in a fasta file?
fasta bioawk awk seqkit
updated 7 months ago by 44k • written 7 months ago by ▴ 10
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0
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665
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Comment: Comment: kmer analysis for genome size estimation
7 months ago by rj.rezwan ▴ 10
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0
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665
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Comment: Comment: kmer analysis for genome size estimation
7 months ago by rj.rezwan ▴ 10
0
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4
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665
views
kmer analysis for genome size estimation
kmer merqury allotetraploid pacbio hifiasm
7 months ago by rj.rezwan ▴ 10
0
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0
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648
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Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
8 months ago by rj.rezwan ▴ 10
0
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1
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648
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
8 months ago by rj.rezwan ▴ 10
0
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1
reply
648
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
8 months ago by rj.rezwan ▴ 10
0
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6
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648
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why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa mapping genome samtools plants
8 months ago by rj.rezwan ▴ 10
0
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0
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263
views
issue with the Arima genomics pipeline for Hi-C scaffolding
plant pacbio assembly genome Hi-C
8 months ago by rj.rezwan ▴ 10
1
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1
reply
364
views
Is there any database for transposable elements in cactus plants
EDTA transposable-elements
updated 8 months ago by 44k • written 9 months ago by ▴ 10
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0
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772
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Comment: Comment: allele matching between identical genotypes
9 months ago by rj.rezwan ▴ 10
0
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4
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772
views
allele matching between identical genotypes
haplotyping plink vcf GATK varaint
9 months ago by rj.rezwan ▴ 10
0
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0
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772
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Comment: Comment: allele matching between identical genotypes
9 months ago by rj.rezwan ▴ 10
0
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1
reply
514
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how to run the compare_genomes for comparative analysis
genome orthofinder evolution
updated 11 months ago by ★ 2.5k • written 11 months ago by ▴ 10
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2
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1.7k
views
Comment: Comment: How to download multiple genome files using command line (MacOS) using datasets
11 months ago by rj.rezwan ▴ 10
0
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0
replies
1.4k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
13 months ago by rj.rezwan ▴ 10
0
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1
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1.4k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
13 months ago by rj.rezwan ▴ 10
0
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1
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1.4k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
updated 13 months ago by 44k • written 13 months ago by ▴ 10
0
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1
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1.4k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
13 months ago by rj.rezwan ▴ 10
0
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1
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1.4k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
13 months ago by rj.rezwan ▴ 10
1
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10
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1.4k
views
file conversion from gtf to gff3 for evidence modeler
gff3 stringtie gtf
13 months ago by rj.rezwan ▴ 10
0
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1
reply
1.1k
views
Comment: Comment: samtools produces truncated error during merging the bam files
13 months ago by rj.rezwan ▴ 10
2
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3
replies
1.1k
views
samtools produces truncated error during merging the bam files
bam samtools HISAT
updated 13 months ago by 44k • written 13 months ago by ▴ 10
2
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5
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1.2k
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 13 months ago by 44k • written 15 months ago by ▴ 10
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1
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1.1k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
15 months ago by rj.rezwan ▴ 10
0
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3
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1.1k
views
investigate the inversions in comparison of assembled genome with reference genome
genome assembly scaffold ragtag dotplot
updated 15 months ago by ▴ 580 • written 15 months ago by ▴ 10
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1
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1.4k
views
Comment: Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
15 months ago by rj.rezwan ▴ 10
2
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3
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1.4k
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio assembly coverage
updated 15 months ago by ★ 1.4k • written 15 months ago by ▴ 10
0
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0
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919
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Comment: Comment: How to make the SNP density plot using hapmap file
16 months ago by rj.rezwan ▴ 10
1
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2
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919
views
How to make the SNP density plot using hapmap file
vcf haplotype hapmap CMplot
16 months ago by rj.rezwan ▴ 10
0
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0
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422
views
How to perform a phylogenetic analysis from a vcf file
variants haplotyping phylogeny vcf
17 months ago by rj.rezwan ▴ 10
4
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2
replies
1.3k
views
How to calculate kinship matrix table from vcf file
variants haplotyping kinship heatmap
updated 17 months ago by 11k • written 18 months ago by ▴ 10
0
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0
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350
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping varaints
18 months ago by rj.rezwan ▴ 10
0
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0
replies
894
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
19 months ago by rj.rezwan ▴ 10
0
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0
replies
894
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
19 months ago by rj.rezwan ▴ 10
2
votes
6
replies
894
views
how to make a header name in a haplotyping script of gatk?
headername gatk haplotypecalling
19 months ago by rj.rezwan ▴ 10
0
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1
reply
894
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
19 months ago by rj.rezwan ▴ 10
0
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1
reply
1.3k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 19 months ago by 44k • written 19 months ago by ▴ 10
0
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1
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1.3k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
19 months ago by rj.rezwan ▴ 10
0
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1
reply
1.3k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
19 months ago by rj.rezwan ▴ 10
2
votes
7
replies
1.3k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling CombineGVCFs GATK
updated 19 months ago by 44k • written 19 months ago by ▴ 10
0
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1
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1.3k
views
Comment: Comment: error with CombineGVCFs to join large number of files
19 months ago by rj.rezwan ▴ 10
6
votes
5
replies
1.3k
views
error with CombineGVCFs to join large number of files
haplotypecalling CombineGVCFs GATK
19 months ago by rj.rezwan ▴ 10
1
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1
reply
525
views
Why GATK is slow with haplotypecalling
GATK HaplotypeCalling
updated 20 months ago by 164k • written 20 months ago by ▴ 10
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0
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1.7k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
21 months ago by rj.rezwan ▴ 10
0
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1
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1.7k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
21 months ago by rj.rezwan ▴ 10
85 results • Page 1 of 2
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