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Comment: C: Suggestion on contig assembler which respect a single copy mutation in a nonaplo
7.1 years ago by johnnytam100 ▴ 110
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1.7k
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Comment: C: Suggestion on contig assembler which respect a single copy mutation in a nonaplo
7.1 years ago by johnnytam100 ▴ 110
0
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0
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1.8k
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Comment: C: Typical % of unmapped reads to genome contigs assembled from the same library?
7.1 years ago by johnnytam100 ▴ 110
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2
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1.8k
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Typical % of unmapped reads to genome contigs assembled from the same library?
bwa mapping Assembly
7.1 years ago by johnnytam100 ▴ 110
2
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1
reply
1.3k
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Recommendation on k-mer counting package for multiple libraries?
kmer
updated 7.1 years ago by 11k • written 7.1 years ago by ▴ 110
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1
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3.2k
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Comment: C: Platanus assembler : unable to start contig assembly, any problem with the comma
7.1 years ago by johnnytam100 ▴ 110
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3
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3.2k
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Platanus assembler : unable to start contig assembly, any problem with the command?
platanus
updated 7.1 years ago by ▴ 620 • written 7.1 years ago by ▴ 110
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0
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2.6k
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Comment: C: Sam FLAGS : how could a read be described as "read unmapped" but "read in revers
7.1 years ago by johnnytam100 ▴ 110
0
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4
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1.7k
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Suggestion on contig assembler which respect a single copy mutation in a nonaploid genome?
Assembly insertion deletion indel
7.1 years ago by johnnytam100 ▴ 110
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1
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
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0
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
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1
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
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1
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
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1
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
votes
1
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2.6k
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Comment: C: Sam FLAGS : how could a read be described as "read unmapped" but "read in revers
7.1 years ago by johnnytam100 ▴ 110
0
votes
1
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
3
votes
19
replies
4.0k
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Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of reference sequence?
sam bwa flag mapping
updated 7.1 years ago by 147k • written 7.1 years ago by ▴ 110
3
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4
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2.6k
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Sam FLAGS : how could a read be described as "read unmapped" but "read in reverse strand"?
sam bwa
updated 7.1 years ago by ▴ 660 • written 7.1 years ago by ▴ 110
1
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0
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
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2
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4.0k
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Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
votes
0
replies
4.0k
views
Comment: C: Choosing sam flags to extract all reads mapped to 5' -> 3' OR 3' -> 5' of refere
7.1 years ago by johnnytam100 ▴ 110
0
votes
1
reply
1.7k
views
Comment: C: Is there any read-mapping package that could map only the first half or the seco
7.1 years ago by johnnytam100 ▴ 110
2
votes
10
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1.7k
views
6 follow
Is there any read-mapping package that could map only the first half or the second half of reads?
mapping bwa sequencing
7.1 years ago by johnnytam100 ▴ 110
0
votes
1
reply
1.7k
views
Comment: C: Is there any read-mapping package that could map only the first half or the seco
7.1 years ago by johnnytam100 ▴ 110
0
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0
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1.7k
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Comment: C: Is there any read-mapping package that could map only the first half or the seco
7.1 years ago by johnnytam100 ▴ 110
0
votes
1
reply
1.7k
views
Comment: C: Is there any read-mapping package that could map only the first half or the seco
7.1 years ago by johnnytam100 ▴ 110
0
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0
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1.7k
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Comment: C: Is there any read-mapping package that could map only the first half or the seco
7.1 years ago by johnnytam100 ▴ 110
0
votes
0
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1.5k
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Identifying insertion of transposable element in a large plant genome, any recommendations on my situation?
transposable element illumina nanopore k-mer
7.2 years ago by johnnytam100 ▴ 110
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0
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1.2k
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Fermikit : Any recommendation on visualization of the output files?
fermikit indel visualization vcf bam
7.2 years ago by johnnytam100 ▴ 110
0
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1
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1.6k
views
Breakdancer : samtools pid process 7845 is still there... invoking kill -9 on 7845 ... Closing samtools process : 7845
breakdancer samtools kill 7845
updated 3.0 years ago by • 0 • written 7.2 years ago by ▴ 110
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0
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7.0k
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Comment: C: Breakdancer : Can't locate Statistics/Descriptive.pm in @INC while trying to run
7.2 years ago by johnnytam100 ▴ 110
0
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1
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7.0k
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Comment: C: Breakdancer : Can't locate Statistics/Descriptive.pm in @INC while trying to run
7.2 years ago by johnnytam100 ▴ 110
5
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4
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7.0k
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Breakdancer : Can't locate Statistics/Descriptive.pm in @INC while trying to run bam2cfg.pl
breakdancer bam2cfg.pl INC perl
updated 7.2 years ago by ▴ 110 • written 7.2 years ago by ▴ 110
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