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1.3k
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Comment: C: Error in GATK germline CNV caller
4.3 years ago by newbio17 ▴ 360
4
votes
3
replies
3.0k
views
Regions & Covered BED files for Agilent SureSelect All Exons v2
sureselect agilent v2 bed wxs
4.3 years ago by newbio17 ▴ 360
1
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0
replies
5.5k
views
Comment: C: How to visualize Boxplot with using fold change values in ggplot2 in R
4.3 years ago by newbio17 ▴ 360
0
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1
reply
2.8k
views
Comment: C: PureCN prepare environment error
4.3 years ago by newbio17 ▴ 360
0
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0
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1.3k
views
Comment: C: miRNA - most reliable pipeline for differential expression analysis
4.3 years ago by newbio17 ▴ 360
1
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0
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2.8k
views
Answer: A: Proper fastq pre-processing for extraction of count matrix
4.4 years ago by newbio17 ▴ 360
2
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1
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3.4k
views
Answer: A: Blood Derived Normal RNA_seq samples TCGA
4.4 years ago by newbio17 ▴ 360
0
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0
replies
1.1k
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Pisces and Octopus on WES
wes variant calling pisces octopus
4.6 years ago by newbio17 ▴ 360
0
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0
replies
4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
0
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0
replies
1.1k
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Comment: C: error en trimmomatic
4.7 years ago by newbio17 ▴ 360
0
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1
reply
4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
0
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1
reply
4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
0
votes
1
reply
4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
0
votes
0
replies
4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
0
votes
1
reply
4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
1
vote
15
replies
4.3k
views
Somatic variant calling with/without matched normal sample (Mutect2)
mutect2 wes variant calling gatk
updated 4.7 years ago by ▴ 550 • written 4.7 years ago by ▴ 360
0
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0
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4.3k
views
Comment: C: Somatic variant calling with/without matched normal sample (Mutect2)
4.7 years ago by newbio17 ▴ 360
0
votes
0
replies
836
views
Comment: C: Mutect2 --enable_clustered_read_position_filter not available in GATK4
4.7 years ago by newbio17 ▴ 360
0
votes
0
replies
1.1k
views
Flat reference vs. pooled reference (unknown target files)
cnvkit
4.8 years ago by newbio17 ▴ 360
1
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1
reply
1.5k
views
Comment: C: Can one use Venn diagrams for identifying genes that are commonly differentially
4.8 years ago by newbio17 ▴ 360
0
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0
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778
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Comment: C: selecting a transcript for in vivo validation
4.8 years ago by newbio17 ▴ 360
2
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2
replies
1.4k
views
Answer: A: Looking for dbSNP b144 version vcf
4.8 years ago by newbio17 ▴ 360
0
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0
replies
684
views
Comment: C: chromosomal distribution with sequence data
4.8 years ago by newbio17 ▴ 360
2
votes
0
replies
689
views
Answer: A: Download TCGA Published data
4.8 years ago by newbio17 ▴ 360
0
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1
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7.0k
views
Answer: A: Somatic variant calling mutect2 tumour only
4.9 years ago by newbio17 ▴ 360
4
votes
3
replies
3.4k
views
Decipering .BAM file from Ion Torrent reads
next-gen sequencing alignment
updated 5.8 years ago by 20 • written 6.3 years ago by ▴ 360
1
vote
1
reply
2.1k
views
Comment: C: Using linear regression to accounting for confounding variables in gene expressi
5.9 years ago by newbio17 ▴ 360
3
votes
3
replies
2.1k
views
Using linear regression to accounting for confounding variables in gene expression data
RNA-Seq linear regression
updated 5.9 years ago by 8.3k • written 5.9 years ago by ▴ 360
0
votes
0
replies
1.5k
views
Comment: C: Correlation analysis between gene expression & tumor purity
5.9 years ago by newbio17 ▴ 360
3
votes
2
replies
1.5k
views
Correlation analysis between gene expression & tumor purity
RNA-Seq tumor purity gene expression correlation
updated 5.9 years ago by 104k • written 5.9 years ago by ▴ 360
0
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1
reply
1.6k
views
Adding RNA-Seq reads from one sequencing experiment to reads from another experiment
RNA-Seq
6.0 years ago by newbio17 ▴ 360
2
votes
2
replies
2.2k
views
Detecting antisense RNA in unstranded RNA-Seq data
RNA-Seq antisense RNA
updated 6.0 years ago by ★ 1.9k • written 6.0 years ago by ▴ 360
3
votes
1
reply
1.4k
views
Differential expression analysis using GFOLD and DESeq2
RNA-Seq deseq2 gfold
updated 6.1 years ago by 88k • written 6.1 years ago by ▴ 360
5
votes
3
replies
3.5k
views
Orientation of reads in .fastq files from RNA-Seq
RNA-Seq Salmon
updated 6.1 years ago by 14k • written 6.1 years ago by ▴ 360
0
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0
replies
3.5k
views
Comment: C: Orientation of reads in .fastq files from RNA-Seq
6.1 years ago by newbio17 ▴ 360
0
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0
replies
1.2k
views
Answer: A: Visualizing overdispersion for raw RNA-Seq data
6.2 years ago by newbio17 ▴ 360
1
vote
2
replies
1.2k
views
Visualizing overdispersion for raw RNA-Seq data
RNA-Seq
6.2 years ago by newbio17 ▴ 360
0
votes
0
replies
3.4k
views
Comment: C: Decipering .BAM file from Ion Torrent reads
6.3 years ago by newbio17 ▴ 360
3
votes
3
replies
2.3k
views
Appending sequence decoys and virus sequences to reference genome (GRCh38)
Assembly alignment genome
updated 18 months ago by • 0 • written 6.4 years ago by ▴ 360
0
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1
reply
1.9k
views
Comment: C: Large number of overlapped genes/transcripts reported by VEP
6.4 years ago by newbio17 ▴ 360
2
votes
3
replies
1.9k
views
Large number of overlapped genes/transcripts reported by VEP
RNA-Seq SNP VEP
6.4 years ago by newbio17 ▴ 360
91 results • Page 2 of 2
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