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Comment:
C: Demultiplexing and deduplicating using barcodes and UMIs in the "mate" read
5.5 years ago by
lech.kaczmarczyk
▴ 50
0
votes
1
reply
5.8k
views
Comment:
C: Demultiplexing and deduplicating using barcodes and UMIs in the "mate" read
5.5 years ago by
lech.kaczmarczyk
▴ 50
0
votes
1
reply
1.5k
views
Comment:
C: RNA half-life calculation using SlamDunk
5.5 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
5.8k
views
Comment:
C: Demultiplexing and deduplicating using barcodes and UMIs in the "mate" read
5.5 years ago by
lech.kaczmarczyk
▴ 50
0
votes
1
reply
5.8k
views
Comment:
C: Demultiplexing and deduplicating using barcodes and UMIs in the "mate" read
5.5 years ago by
lech.kaczmarczyk
▴ 50
2
votes
9
replies
5.8k
views
Demultiplexing and deduplicating using barcodes and UMIs in the "mate" read
RNA-Seq
next-gen
demultiplexing
updated 6 months ago by
i.sudbery
20k • written 5.5 years ago by
lech.kaczmarczyk
▴ 50
0
votes
1
reply
2.1k
views
Software for gene co-expression network analysis / clustering enabling integration of paired miRNA-mRNA expression data
RNA-Seq
miRNA
mRNA
WGCNA
Gene clustering
updated 6.6 years ago by
Biostar
20 • written 7.2 years ago by
lech.kaczmarczyk
▴ 50
4
votes
3
replies
3.8k
views
retrieving attributes of a list generated by read.fasta()
RNA-Seq
R
updated 7.1 years ago by
cpad0112
21k • written 7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.6k
views
Comment:
C: QSEA package - Enrichement parameters choice (addEnrichmentParameters)
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
2
replies
1.6k
views
R package (or other software) allowing to save a biological network in GPML format
GPML
Cytoscape
updated 7.1 years ago by
Jean-Karim Heriche
27k • written 7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
2
replies
1.6k
views
QSEA package - Enrichement parameters choice (addEnrichmentParameters)
QSEA
MeDIP
MEDIPS
methylation
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.5k
views
Comment:
C: Cytoscape - "Ontology and Annotation" import window not opening
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.8k
views
Peak calling on MeDIP data
MeDIP
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
2
replies
1.5k
views
Cytoscape - "Ontology and Annotation" import window not opening
Cytoscape
updated 7.1 years ago by
xanderpico
▴ 580 • written 7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.3k
views
Pathvisio fails to open .xml files.
pathvisio
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.7k
views
Custom graphNEL object for pathview
RNA-Seq
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
2.0k
views
EdgeR GLMfit issue - only high and negative LFC, please help
RNA-Seq
7.1 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.2k
views
Calculating genomic distances between miRNA clusters
RNA
RNA-Seq
7.2 years ago by
lech.kaczmarczyk
▴ 50
1
vote
7
replies
5.0k
views
ENSEMBL IDs 2 Entrez Gene IDs - what to do if no match?
annotation
ensembl
entrez
biomart
updated 7.2 years ago by
Emily
24k • written 7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
5.0k
views
Comment:
C: ENSEMBL IDs 2 Entrez Gene IDs - what to do if no match?
7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
5.0k
views
Comment:
C: ENSEMBL IDs 2 Entrez Gene IDs - what to do if no match?
7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
1.3k
views
miRNA annotation package / converting mature_mirna_ids into ENTREZ symbols
RNA-Seq
miRNA annotation
7.2 years ago by
lech.kaczmarczyk
▴ 50
1
vote
0
replies
2.9k
views
Comment:
C: cell type-specific miRNA analysis and miRNA-mRNA expression correlation
7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
1
reply
2.9k
views
Comment:
C: cell type-specific miRNA analysis and miRNA-mRNA expression correlation
7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
1
reply
2.9k
views
Answer:
A: cell type-specific miRNA analysis and miRNA-mRNA expression correlation
7.2 years ago by
lech.kaczmarczyk
▴ 50
1
vote
5
replies
2.9k
views
cell type-specific miRNA analysis and miRNA-mRNA expression correlation
RNA-Seq
7.2 years ago by
lech.kaczmarczyk
▴ 50
1
vote
1
reply
3.7k
views
Comment:
C: match() function returning NA even when there is match
7.2 years ago by
lech.kaczmarczyk
▴ 50
2
votes
3
replies
3.7k
views
match() function returning NA even when there is match
RNA-Seq
updated 7.2 years ago by
Kevin Blighe
88k • written 7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
2.1k
views
Comment:
C: Conditional modification of counts in the DESeq Data Set
7.2 years ago by
lech.kaczmarczyk
▴ 50
1
vote
3
replies
2.1k
views
Conditional modification of counts in the DESeq Data Set
deseq2
updated 7.2 years ago by
James Ashmore
★ 3.5k • written 7.2 years ago by
lech.kaczmarczyk
▴ 50
0
votes
0
replies
3.8k
views
Comment:
C: retrieving attributes of a list generated by read.fasta()
7.2 years ago by
lech.kaczmarczyk
▴ 50
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