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Answer: A: STAR problem: EXITING because of INPUT ERROR: could not open genomeFastaFile:
6.1 years ago by caggtaagtat ★ 1.9k
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Answer: A: STAR problem: EXITING because of INPUT ERROR: could not open genomeFastaFile:
6.1 years ago by caggtaagtat ★ 1.9k
4
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14k
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Comment: C: Extract gene coordinates from GTF
6.1 years ago by caggtaagtat ★ 1.9k
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1.9k
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Comment: C: Ovation RNA-seq system, bionfomatic alignment and htseq-count
6.1 years ago by caggtaagtat ★ 1.9k
3
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1
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1.9k
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Answer: A: Ovation RNA-seq system, bionfomatic alignment and htseq-count
6.1 years ago by caggtaagtat ★ 1.9k
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6.6k
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Comment: C: What does the transcript support level (TSL) from ensembl mean?
6.2 years ago by caggtaagtat ★ 1.9k
2
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2
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6.6k
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What does the transcript support level (TSL) from ensembl mean?
TSL ensembl annotation
6.2 years ago by caggtaagtat ★ 1.9k
3
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27
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3.0k
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7 follow
Forum: What server do you use?
HPC AWS
updated 18 months ago by 44k • written 6.4 years ago by ★ 1.9k
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Answer: A: STAR indexing gets killed on its own at a particular time (while generating suff
6.2 years ago by caggtaagtat ★ 1.9k
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4.0k
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Comment: C: Counting reads aligned to forward or reverse strand
6.3 years ago by caggtaagtat ★ 1.9k
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1
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4.0k
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Comment: C: Counting reads aligned to forward or reverse strand
6.3 years ago by caggtaagtat ★ 1.9k
2
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3
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4.0k
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Counting reads aligned to forward or reverse strand
RNA-Seq
updated 6.3 years ago by ★ 3.9k • written 6.3 years ago by ★ 1.9k
0
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1
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
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0
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1.7k
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Answer: A: sortMeRNA before or after adapters trimming ?
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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6.4k
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Comment: C: How to repair corrupted fastq files after sortmeRNA
6.4 years ago by caggtaagtat ★ 1.9k
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1
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
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0
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
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3
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
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0
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
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2
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3.0k
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Comment: C: What server do you use?
6.4 years ago by caggtaagtat ★ 1.9k
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2.5k
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Comment: C: How to get ungapped single-end reads from the STAR output bam file?
6.4 years ago by caggtaagtat ★ 1.9k
1
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1
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6.9k
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Comment: C: Filtering out the spliced reads from bam file.
6.4 years ago by caggtaagtat ★ 1.9k
3
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6
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2.5k
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How to get ungapped single-end reads from the STAR output bam file?
RNA-Seq STAR ungapped single-end
updated 6.4 years ago by 164k • written 6.4 years ago by ★ 1.9k
0
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0
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2.5k
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Comment: C: How to get ungapped single-end reads from the STAR output bam file?
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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2.5k
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Comment: C: How to get ungapped single-end reads from the STAR output bam file?
6.4 years ago by caggtaagtat ★ 1.9k
1
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1
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1.7k
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Answer: A: Need help in GSEA analysis and interpretation
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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1.4k
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Comment: C: Counting reads spanning two genes
6.4 years ago by caggtaagtat ★ 1.9k
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0
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1.4k
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Comment: C: Counting reads spanning two genes
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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1.4k
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Comment: C: Counting reads spanning two genes
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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1.4k
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Comment: C: Counting reads spanning two genes
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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1.4k
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Comment: C: Counting reads spanning two genes
6.4 years ago by caggtaagtat ★ 1.9k
4
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8
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1.4k
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Counting reads spanning two genes
RNA-Seq sequencing
updated 6.4 years ago by 164k • written 6.4 years ago by ★ 1.9k
0
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0
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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1.1k
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Abundance comparison of unprocessed large mitochondrial RNA transcirpt
RNA-Seq Mapping mitochondria
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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903
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Answer: A: quality control rRNA mapping
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
0
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1
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
3
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14
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9.0k
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Genebank to GTF recommended tool?
annotation RNA-SEQ GTF
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
0
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0
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9.0k
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Comment: C: Genebank to GTF recommended tool?
6.4 years ago by caggtaagtat ★ 1.9k
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0
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4.7k
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Comment: C: HIV : gtf or gff annotation
6.4 years ago by caggtaagtat ★ 1.9k
2
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5
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2.6k
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GTF file for HIV strain pNL4-3
HIV annotation mapping
updated 8 months ago by ▴ 140 • written 6.4 years ago by ★ 1.9k
0
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1
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2.6k
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Comment: C: GTF file for HIV strain pNL4-3
6.4 years ago by caggtaagtat ★ 1.9k
5
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0
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3.9k
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Answer: A: Splice junction sites and number of splitted reads from STAR aligned bam
6.4 years ago by caggtaagtat ★ 1.9k
272 results • Page 4 of 6
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