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5
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3
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4.4k
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RTG vcfeval: number of variants reported by vcfeval is not equal to actual number of variants.
rtg vcfeval validation hg19
updated 4.4 years ago by ★ 1.6k • written 4.6 years ago by ▴ 110
0
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0
replies
1.4k
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Comment: C: VEP specific celltype defining regulatory variants
5.2 years ago by c.clarido ▴ 110
0
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1
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1.4k
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Comment: C: VEP specific celltype defining regulatory variants
5.2 years ago by c.clarido ▴ 110
0
votes
6
replies
1.4k
views
VEP specific celltype defining regulatory variants
vep celltype ensembl regulatory
5.2 years ago by c.clarido ▴ 110
0
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1
reply
1.4k
views
Answer: A: VEP specific celltype defining regulatory variants
5.2 years ago by c.clarido ▴ 110
0
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0
replies
2.0k
views
Comment: C: VEP: filter_vep, custom VCF annotation (kaviar)
5.2 years ago by c.clarido ▴ 110
0
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1
reply
2.0k
views
Comment: C: VEP: filter_vep, custom VCF annotation (kaviar)
5.2 years ago by c.clarido ▴ 110
3
votes
4
replies
2.0k
views
VEP: filter_vep, custom VCF annotation (kaviar)
vep kaviar filter_vep
updated 5.2 years ago by 24k • written 5.2 years ago by ▴ 110
0
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0
replies
1.2k
views
Comment: C: FANTOM5 enhancers: intepretations
5.4 years ago by c.clarido ▴ 110
1
vote
2
replies
1.2k
views
FANTOM5 enhancers: intepretations
fantom5 enhancers
updated 5.4 years ago by 88k • written 5.4 years ago by ▴ 110
0
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1
reply
1.7k
views
Comment: C: ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
5.4 years ago by c.clarido ▴ 110
0
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1
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1.7k
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Comment: C: ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
5.4 years ago by c.clarido ▴ 110
0
votes
1
reply
1.7k
views
Comment: C: ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
5.4 years ago by c.clarido ▴ 110
0
votes
7
replies
1.7k
views
ensembl VEP: gnomAD genome annotation <AF1>&<AF2>
vep annotation ensembl gnomad
5.4 years ago by c.clarido ▴ 110
3
votes
1
reply
1.1k
views
Forum: Recommend papers: automated vs manual downstream analysis
downstream-analysis reproducibility
updated 19 months ago by 44k • written 5.6 years ago by ▴ 110
0
votes
2
replies
1.9k
views
How to run R docker in WDL?
R docker wdl cromwell gatk
5.7 years ago by c.clarido ▴ 110
1
vote
0
replies
1.2k
views
WDL + cromwell and remote server
wdl cromwel pipeline sshfs
5.8 years ago by c.clarido ▴ 110
2
votes
1
reply
1.8k
views
WDL: how to use scatter for multiple callers?
wdl scatter
5.8 years ago by c.clarido ▴ 110
1
vote
3
replies
1.9k
views
how to install survivor with conda
instal survivor conda channel
updated 5.9 years ago by 105k • written 5.9 years ago by ▴ 110
0
votes
0
replies
1.9k
views
Comment: C: how to install survivor with conda
5.9 years ago by c.clarido ▴ 110
11
votes
14
replies
6.6k
views
7 follow
How to write the output in snakefile (snakemake) for bowtie2-build
bowtie2-build bowtie2 snakemake snakefile
updated 6.0 years ago by • 0 • written 6.2 years ago by ▴ 110
4
votes
5
replies
4.0k
views
bowtie2 error: Read .... has more quality values than read characters.
assembly bowtie2 error read
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 110
0
votes
0
replies
3.3k
views
Comment: C: How to add help function in a snakemake file
6.2 years ago by c.clarido ▴ 110
7
votes
3
replies
3.3k
views
How to add help function in a snakemake file
snakemake snakefile helpfunction
updated 6.2 years ago by 15k • written 6.2 years ago by ▴ 110
0
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0
replies
4.5k
views
Comment: C: Error: Snakemake skiped a rule
6.2 years ago by c.clarido ▴ 110
0
votes
1
reply
4.5k
views
Comment: C: Error: Snakemake skiped a rule
6.2 years ago by c.clarido ▴ 110
0
votes
1
reply
4.5k
views
Comment: C: Error: Snakemake skiped a rule
6.2 years ago by c.clarido ▴ 110
0
votes
5
replies
4.5k
views
Error: Snakemake skiped a rule
snakemake snakefile snps indels pipeline
updated 6.2 years ago by ▴ 250 • written 6.2 years ago by ▴ 110
0
votes
0
replies
3.4k
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Comment: C: Installing samtools from sourceforge
6.2 years ago by c.clarido ▴ 110
0
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0
replies
3.4k
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Comment: C: Installing samtools from sourceforge
6.2 years ago by c.clarido ▴ 110
4
votes
12
replies
3.4k
views
Installing samtools from sourceforge
installation sourceforge samtools samtools0.1.19
updated 6.2 years ago by ▴ 110 • written 6.2 years ago by ▴ 110
0
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1
reply
3.4k
views
Comment: C: Installing samtools from sourceforge
6.2 years ago by c.clarido ▴ 110
0
votes
2
replies
3.4k
views
Comment: C: Installing samtools from sourceforge
6.2 years ago by c.clarido ▴ 110
0
votes
0
replies
3.9k
views
Comment: C: How to read VCF (v4.1) file? (student project) (samtools version 0.1.19)
6.2 years ago by c.clarido ▴ 110
0
votes
2
replies
3.9k
views
Comment: C: How to read VCF (v4.1) file? (student project) (samtools version 0.1.19)
6.2 years ago by c.clarido ▴ 110
4
votes
12
replies
3.9k
views
How to read VCF (v4.1) file? (student project) (samtools version 0.1.19)
variant-calling samtools VCF BCF
updated 9 months ago by 44k • written 6.2 years ago by ▴ 110
0
votes
2
replies
3.9k
views
Comment: C: How to read VCF (v4.1) file? (student project)
6.2 years ago by c.clarido ▴ 110
0
votes
1
reply
3.9k
views
Comment: C: How to read VCF (v4.1) file? (student project)
6.2 years ago by c.clarido ▴ 110
0
votes
1
reply
6.6k
views
Comment: C: How to write the output in snakefile (snakemake) for bowtie2-build
6.2 years ago by c.clarido ▴ 110
0
votes
1
reply
6.6k
views
Comment: C: How to write the output in snakefile (snakemake) for bowtie2-build
6.2 years ago by c.clarido ▴ 110
0
votes
1
reply
6.6k
views
Comment: C: How to write the output in snakefile (snakemake) for bowtie2-build
6.2 years ago by c.clarido ▴ 110
2
votes
1
reply
2.0k
views
How to read my Samtools mpileup?
samtools mpileup student
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 110
0
votes
2
replies
1.9k
views
Comment: C: Why are GC% per base important in quality control of reads?
6.2 years ago by c.clarido ▴ 110
0
votes
6
replies
1.9k
views
Why are GC% per base important in quality control of reads?
QC Assembly
updated 6.2 years ago by ★ 2.2k • written 6.2 years ago by ▴ 110
0
votes
1
reply
4.0k
views
Comment: C: bowtie2 error: Read .... has more quality values than read characters.
6.2 years ago by c.clarido ▴ 110
0
votes
0
replies
4.0k
views
Comment: C: bowtie2 error: Read .... has more quality values than read characters.
6.2 years ago by c.clarido ▴ 110
1
vote
6
replies
3.0k
views
Trimming reads based on quality (Phred) scores
reads trimming phredscore qualityscore
6.3 years ago by c.clarido ▴ 110
0
votes
0
replies
3.0k
views
Comment: C: Trimming reads based on quality (Phred) scores
6.3 years ago by c.clarido ▴ 110
0
votes
0
replies
3.0k
views
Comment: C: Trimming reads based on quality (Phred) scores
6.3 years ago by c.clarido ▴ 110
3
votes
2
replies
1.0k
views
How do I read a logfile?
next-gen bash logfile Galaxy
updated 6.3 years ago by 105k • written 6.3 years ago by ▴ 110
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