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5
votes
4
replies
6.7k
views
6 follow
Classic threshold for log2 fold change in RNA-seq experiment
RNA-Seq
updated 7 months ago by ▴ 10 • written 4.5 years ago by ▴ 330
3
votes
2
replies
775
views
Input source for the IPA tool
IPA RNA-seq
3.3 years ago by Mozart ▴ 330
0
votes
0
replies
775
views
Comment: Comment: Input source for the IPA tool
3.3 years ago by Mozart ▴ 330
2
votes
2
replies
1.2k
views
EM algorithm in Kallisto
RNA-seq Kallisto
3.3 years ago by Mozart ▴ 330
0
votes
0
replies
1.2k
views
Comment: Comment: EM algorithm in Kallisto
3.3 years ago by Mozart ▴ 330
0
votes
0
replies
1.2k
views
Comment: Comment: Kallisto Bootstrapping and deseq2
3.3 years ago by Mozart ▴ 330
5
votes
2
replies
1.2k
views
Kallisto Bootstrapping and deseq2
Deseq2
3.3 years ago by Mozart ▴ 330
0
votes
1
reply
1.3k
views
Comment: Comment: Adapter trimming with trimmomatic
3.3 years ago by Mozart ▴ 330
0
votes
3
replies
1.3k
views
Adapter trimming with trimmomatic
trimmomatic RNAseq
updated 3.3 years ago by 148k • written 3.3 years ago by ▴ 330
0
votes
0
replies
986
views
Comment: C: Annotating two columns at the same time
3.9 years ago by Mozart ▴ 330
0
votes
2
replies
986
views
Comment: A: Annotating two columns at the same time
3.9 years ago by Mozart ▴ 330
2
votes
8
replies
986
views
Annotating two columns at the same time
RNA-Seq r
3.9 years ago by Mozart ▴ 330
15
votes
14
replies
2.2k
views
how can interpret these biologically weird results?
RNA-Seq
updated 3.9 years ago by 20 • written 7.1 years ago by ▴ 330
0
votes
1
reply
986
views
Comment: C: Annotating two columns at the same time
3.9 years ago by Mozart ▴ 330
0
votes
0
replies
1.1k
views
Comment: C: Network analysis: where to start?
4.2 years ago by Mozart ▴ 330
0
votes
1
reply
1.1k
views
Comment: C: Network analysis: where to start?
4.2 years ago by Mozart ▴ 330
3
votes
5
replies
1.1k
views
Network analysis: where to start?
RNA-Seq network analysis
updated 4.2 years ago by ★ 1.4k • written 4.2 years ago by ▴ 330
0
votes
1
reply
1.6k
views
Comment: C: PCA plots and biological information taken from other principal components
4.2 years ago by Mozart ▴ 330
0
votes
1
reply
834
views
Convergence of betas, iterations arguments with nbinomialWaldTest
RNA-Seq
4.2 years ago by Mozart ▴ 330
1
vote
1
reply
1.2k
views
Meta Analysis on RNA-seq data
RNA-Seq meta analysis
updated 4.3 years ago by 20 • written 4.4 years ago by ▴ 330
0
votes
0
replies
1.4k
views
Comment: C: List of uniquely expressed genes
4.3 years ago by Mozart ▴ 330
0
votes
1
reply
1.4k
views
Comment: C: List of uniquely expressed genes
4.4 years ago by Mozart ▴ 330
0
votes
1
reply
1.4k
views
Comment: C: List of uniquely expressed genes
4.4 years ago by Mozart ▴ 330
0
votes
6
replies
1.4k
views
List of uniquely expressed genes
rna-seq RNA-Seq counts
4.4 years ago by Mozart ▴ 330
1
vote
1
reply
947
views
Gene annotation outputs NA values for real genes
RNA-Seq annotation
4.5 years ago by Mozart ▴ 330
0
votes
0
replies
6.7k
views
Comment: C: "Enhanced Volcano" package - how to set p adjusted cut off?
4.5 years ago by Mozart ▴ 330
0
votes
1
reply
6.7k
views
Comment: C: "Enhanced Volcano" package - how to set p adjusted cut off?
4.5 years ago by Mozart ▴ 330
0
votes
0
replies
955
views
Comment: C: Differential expression analysis in DESeq2 for an experiment with multiple varia
4.5 years ago by Mozart ▴ 330
1
vote
2
replies
955
views
Differential expression analysis in DESeq2 for an experiment with multiple variable
deseq2 RNA-Seq
updated 4.5 years ago by 86k • written 4.5 years ago by ▴ 330
2
votes
1
reply
643
views
Different trimming for different batches within the same experiment
trimming RNA-Seq
4.5 years ago by Mozart ▴ 330
20
votes
15
replies
8.0k
views
Kallisto-Sleuth or Kallisto-Deseq2?
RNA-Seq
updated 4.5 years ago by ▴ 20 • written 7.1 years ago by ▴ 330
2
votes
1
reply
813
views
Differences when genome assembly changes in Kallisto
RNA-Seq genome
4.5 years ago by Mozart ▴ 330
0
votes
0
replies
1.4k
views
Comment: C: Comparison between heat maps corrected with different algorithms
4.5 years ago by Mozart ▴ 330
0
votes
1
reply
1.4k
views
Comment: C: Comparison between heat maps corrected with different algorithms
4.5 years ago by Mozart ▴ 330
0
votes
1
reply
1.4k
views
Comment: C: Comparison between heat maps corrected with different algorithms
4.5 years ago by Mozart ▴ 330
3
votes
1
reply
1.4k
views
Duplication level (RNA)
RNA-Seq
4.5 years ago by Mozart ▴ 330
3
votes
2
replies
2.1k
views
biomaRt correct annotation but...
RNA-Seq
4.5 years ago by Mozart ▴ 330
0
votes
2
replies
1.3k
views
Highly biased experiment showing funny histogram of p values for all tests. Suggestions?
deseq2 RNA-Seq filtering
4.5 years ago by Mozart ▴ 330
3
votes
3
replies
8.9k
views
Kallisto and downstream analysis with tximport and DESeq2
RNA-Seq kallisto tximport deseq2
4.5 years ago by Mozart ▴ 330
5
votes
4
replies
1.5k
views
same experiment, different values with my heat map. Any help?
RNA-Seq heatmap
4.5 years ago by Mozart ▴ 330
2
votes
5
replies
1.8k
views
Plotting PCA plot in DESeq2 on SVA corrected counts
sva deseq2 pca
4.5 years ago by Mozart ▴ 330
0
votes
1
reply
1.8k
views
Comment: C: Plotting PCA plot in DESeq2 on SVA corrected counts
4.5 years ago by Mozart ▴ 330
1
vote
6
replies
1.4k
views
Comparison between heat maps corrected with different algorithms
sva
updated 4.5 years ago by 88k • written 4.5 years ago by ▴ 330
0
votes
1
reply
1.6k
views
Comment: C: Clarification about MA plot
4.5 years ago by Mozart ▴ 330
1
vote
3
replies
1.6k
views
Clarification about MA plot
RNA-Seq maplot
4.5 years ago by Mozart ▴ 330
0
votes
0
replies
932
views
Conservative (unadjusted) p value histograms
RNA-Seq
4.5 years ago by Mozart ▴ 330
0
votes
1
reply
1.8k
views
Comment: C: Plotting PCA plot in DESeq2 on SVA corrected counts
4.6 years ago by Mozart ▴ 330
0
votes
0
replies
2.6k
views
Comment: C: Heatmap with just two columns
4.6 years ago by Mozart ▴ 330
0
votes
1
reply
2.6k
views
Comment: C: Heatmap with just two columns
4.6 years ago by Mozart ▴ 330
2
votes
4
replies
2.6k
views
Heatmap with just two columns
RNA-Seq heatmap
4.6 years ago by Mozart ▴ 330
143 results • Page 1 of 3
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