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Answer: Answer: How to annotate gene names for genomic coordinates?
2.5 years ago by jaafari.omid ▴ 80
0
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4
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2.7k
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How to do AMOVA on GBS data
SNP genome R GBS
updated 2.9 years ago by • 0 • written 5.9 years ago by ▴ 80
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0
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1.3k
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Comment: Comment: Fis, Ho and He calculation from Whole Genome Seq data
3.6 years ago by jaafari.omid ▴ 80
0
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0
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683
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How should we replace NAs from a genelight object?
R glpca adegenet GBS SNP
3.6 years ago by jaafari.omid ▴ 80
0
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2
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1.3k
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Fis, Ho and He calculation from Whole Genome Seq data
SNP R genome
3.6 years ago by jaafari.omid ▴ 80
0
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0
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1.2k
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Comment: C: Keep just chromosomes in a .bam file
updated 4.7 years ago by 44k • written 4.7 years ago by ▴ 80
0
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1
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1.2k
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Comment: C: Keep just chromosomes in a .bam file
updated 4.7 years ago by 44k • written 4.7 years ago by ▴ 80
1
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5
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1.2k
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Keep just chromosomes in a .bam file
genome next-gen assembly snp alignment
updated 4.7 years ago by 44k • written 4.7 years ago by ▴ 80
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1
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1.2k
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Comment: C: Keep just chromosomes in a .bam file
4.7 years ago by jaafari.omid ▴ 80
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0
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2.7k
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Comment: C: Allele frequency visualization
4.9 years ago by jaafari.omid ▴ 80
0
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0
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859
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Allele frequency comparison between pairs of populations
SNP next-gen Allele frequency software error
4.9 years ago by jaafari.omid ▴ 80
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0
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3.4k
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Comment: C: How to merge different BAM files?
5.1 years ago by jaafari.omid ▴ 80
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1
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3.4k
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Comment: C: How to merge different BAM files?
5.1 years ago by jaafari.omid ▴ 80
0
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5
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3.4k
views
How to merge different BAM files?
SNP next-gen alignment BAM SAMtools
updated 5.1 years ago by 14k • written 5.1 years ago by ▴ 80
0
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0
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1.1k
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Fst Visulization from WGS data
R SNP next-gen WGS Fst
5.2 years ago by jaafari.omid ▴ 80
1
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0
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1.2k
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Comment: C: How should we merge the Chromosome and position columns of a vcf and or .map fil
5.4 years ago by jaafari.omid ▴ 80
2
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2
replies
1.2k
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How should we merge the Chromosome and position columns of a vcf and or .map file to have the ID column without dots?
SNP vcf plink
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 80
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1
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4.2k
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Comment: C: rename samples in a vcf or plink file
5.4 years ago by jaafari.omid ▴ 80
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0
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4.2k
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Comment: C: rename samples in a vcf or plink file
5.5 years ago by jaafari.omid ▴ 80
0
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0
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4.2k
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Comment: C: rename samples in a vcf or plink file
5.5 years ago by jaafari.omid ▴ 80
8
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6
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4.2k
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rename samples in a vcf or plink file
snp vcf plink
updated 5.5 years ago by 47k • written 5.5 years ago by ▴ 80
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0
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1.0k
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Error in GWAS using GenABEL package
SNP R genome next-gen GWAS
5.5 years ago by jaafari.omid ▴ 80
1
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0
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5.0k
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Comment: C: Depth of coverage
5.7 years ago by jaafari.omid ▴ 80
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1
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5.0k
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Comment: C: Depth of coverage
5.7 years ago by jaafari.omid ▴ 80
0
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1
reply
5.0k
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Comment: C: Depth of coverage
5.7 years ago by jaafari.omid ▴ 80
2
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6
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5.0k
views
Depth of coverage
snp next-gen genome vcf sequence
5.7 years ago by jaafari.omid ▴ 80
1
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0
replies
46k
views
Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
5.7 years ago by jaafari.omid ▴ 80
1
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1
reply
46k
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Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
5.8 years ago by jaafari.omid ▴ 80
4
votes
5
replies
2.7k
views
Allele frequency visualization
snp R stacks vcftools
updated 18 months ago by • 0 • written 5.9 years ago by ▴ 80
0
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1
reply
1.8k
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Comment: C: vcfR for Whole Genome Data
5.8 years ago by jaafari.omid ▴ 80
1
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3
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1.8k
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vcfR for Whole Genome Data
snp genome R VCF vcfR
5.8 years ago by jaafari.omid ▴ 80
0
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0
replies
3.2k
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Comment: C: VCF file filtration
5.8 years ago by jaafari.omid ▴ 80
0
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1
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3.2k
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Comment: C: VCF file filtration
5.8 years ago by jaafari.omid ▴ 80
1
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1
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3.2k
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Comment: C: VCF file filtration
5.8 years ago by jaafari.omid ▴ 80
0
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2
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3.2k
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Comment: C: VCF file filtration
5.8 years ago by jaafari.omid ▴ 80
0
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2
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3.2k
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Comment: C: VCF file filtration
5.8 years ago by jaafari.omid ▴ 80
0
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1
reply
3.2k
views
Comment: C: VCF file filtration
5.8 years ago by jaafari.omid ▴ 80
4
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14
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3.2k
views
VCF file filtration
snp WGS VCF bcftools vcftools
5.8 years ago by jaafari.omid ▴ 80
0
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0
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5.9k
views
Comment: C: Calling SNPs using bcftools mpileup
5.8 years ago by jaafari.omid ▴ 80
6
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6
replies
5.9k
views
Calling SNPs using bcftools mpileup
snp genome bcftools-mpileup WGS SNP calling
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 80
0
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1
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5.9k
views
Comment: A: Calling SNPs using bcftools mpileup
5.8 years ago by jaafari.omid ▴ 80
0
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0
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5.9k
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Comment: C: Calling SNPs using bcftools mpileup
5.8 years ago by jaafari.omid ▴ 80
0
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1
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2.7k
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Comment: C: How to do AMOVA on GBS data
5.9 years ago by jaafari.omid ▴ 80
1
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3
replies
1.6k
views
Manhattan plot from GBS data
SNP
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 80
0
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4
replies
3.5k
views
manhattan plot with Fst values
SNP software error
updated 6.0 years ago by 44k • written 6.0 years ago by ▴ 80
0
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1
reply
3.5k
views
Comment: C: manhattan plot with Fst values
updated 6.0 years ago by 44k • written 6.0 years ago by ▴ 80
0
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0
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2.7k
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Comment: C: How to perform VennDiagram from a VCF file?
6.0 years ago by jaafari.omid ▴ 80
0
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1
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2.7k
views
Comment: C: How to perform VennDiagram from a VCF file?
6.0 years ago by jaafari.omid ▴ 80
0
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1
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2.7k
views
Comment: C: How to perform VennDiagram from a VCF file?
6.0 years ago by jaafari.omid ▴ 80
0
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6
replies
2.7k
views
How to perform VennDiagram from a VCF file?
SNP genome VennDiagram
updated 6.0 years ago by ▴ 140 • written 6.0 years ago by ▴ 80
64 results • Page 1 of 2
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