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Comment: Comment: How to use htseq-count with several samples ?
3.0 years ago by VBer ▴ 200
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0
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1.2k
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Comment: C: Visualization of fold changes of candidate genes as heatmap across multiple inde
4.0 years ago by VBer ▴ 200
1
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1
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2.4k
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Comment: C: Mann-Whitney Test/Wilcoxon but for individual genes between case and control
4.0 years ago by VBer ▴ 200
1
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2
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1.2k
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Visualization of fold changes of candidate genes as heatmap across multiple independent experiments
RNA-Seq Visualization HeatMap Meta-analysis
4.0 years ago by VBer ▴ 200
0
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0
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2.4k
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Comment: C: Mann-Whitney Test/Wilcoxon but for individual genes between case and control
4.1 years ago by VBer ▴ 200
2
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10
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2.4k
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Mann-Whitney Test/Wilcoxon but for individual genes between case and control
RNA-Seq Statistics
4.1 years ago by VBer ▴ 200
0
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1
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868
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Comment: C: How to make KEGG plots based on the gene list with KO ID
4.1 years ago by VBer ▴ 200
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1
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2.4k
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Comment: C: Mann-Whitney Test/Wilcoxon but for individual genes between case and control
4.1 years ago by VBer ▴ 200
0
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0
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2.4k
views
Comment: C: Mann-Whitney Test/Wilcoxon but for individual genes between case and control
4.1 years ago by VBer ▴ 200
0
votes
1
reply
2.4k
views
Comment: C: Mann-Whitney Test/Wilcoxcon but for individual genes between case and control
4.1 years ago by VBer ▴ 200
1
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0
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926
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Comment: C: Methodology: Meta-analysis and integration of published transcriptomics and prot
4.2 years ago by VBer ▴ 200
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0
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1.2k
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Comment: C: Hypergeometric test on gene lists
4.2 years ago by VBer ▴ 200
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0
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17k
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Comment: C: Justifying Learning Linux For Bioinformatics
4.3 years ago by VBer ▴ 200
1
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1
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926
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Methodology: Meta-analysis and integration of published transcriptomics and proteomics data
RNA-Seq proteomics omics
4.3 years ago by VBer ▴ 200
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0
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2.2k
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Comment: C: Possible reasons mapping percentage abysmally low for miRNA reads?
4.3 years ago by VBer ▴ 200
0
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2
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3.1k
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What is the importance of checking per base sequence content and per sequence GC content during Quality Control of NGS reads?
fastqc next-gen sequencing
updated 4.6 years ago by 20 • written 5.6 years ago by ▴ 200
2
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1
reply
2.7k
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Calculating genetic distance from VCF to MAP format
population genomics
updated 4.6 years ago by 11k • written 4.6 years ago by ▴ 200
1
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0
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1.3k
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Comment: C: blastn of reference genome CDS to subject genome gives range of hits, which do n
4.6 years ago by VBer ▴ 200
0
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1
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1.3k
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Comment: C: blastn of reference genome CDS to subject genome gives range of hits, which do n
4.7 years ago by VBer ▴ 200
0
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1
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1.3k
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Comment: C: blastn of reference genome CDS to subject genome gives range of hits, which do n
4.7 years ago by VBer ▴ 200
4
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6
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1.3k
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blastn of reference genome CDS to subject genome gives range of hits, which do not translate into protein
BLAST
4.7 years ago by VBer ▴ 200
0
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0
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2.2k
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Comment: C: Possible reasons mapping percentage abysmally low for miRNA reads?
4.7 years ago by VBer ▴ 200
7
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9
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2.2k
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Possible reasons mapping percentage abysmally low for miRNA reads?
miRNA miRDeep2
4.9 years ago by VBer ▴ 200
1
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2
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2.2k
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Comment: C: Possible reasons mapping percentage abysmally low for miRNA reads?
4.9 years ago by VBer ▴ 200
1
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1
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2.2k
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Comment: C: Possible reasons mapping percentage abysmally low for miRNA reads?
4.9 years ago by VBer ▴ 200
0
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1
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2.1k
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Comment: C: NOISeq Fold Change calculation seems off?
4.9 years ago by VBer ▴ 200
3
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3
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2.1k
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NOISeq Fold Change calculation seems off?
RNA-Seq
updated 4.9 years ago by ▴ 320 • written 5.4 years ago by ▴ 200
0
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0
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1.7k
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Comment: C: Remove homozygous reference SNPS present in ALL samples of multi-sample VCF file
5.0 years ago by VBer ▴ 200
1
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3
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1.7k
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Remove homozygous reference SNPS present in ALL samples of multi-sample VCF file
vcf
5.0 years ago by VBer ▴ 200
0
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0
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2.2k
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Comment: C: getting sequence by combining reference and variants (fasta and vcf files)
5.3 years ago by VBer ▴ 200
0
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0
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7.1k
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Comment: C: Emboss seqret - problem conversion gff+fasta to EMBL
5.3 years ago by VBer ▴ 200
1
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0
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4.1k
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Comment: C: Hard time trying to calculate Allele Frequency and DP from Platypus
5.3 years ago by VBer ▴ 200
0
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0
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1.3k
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Comment: C: Bioinformatics Project this summer
5.4 years ago by VBer ▴ 200
1
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0
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1.1k
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Answer: A: Coverage of exome
5.4 years ago by VBer ▴ 200
1
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0
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26k
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Answer: A: Variant call format (VCF) file, how to get statistics per sample?
5.4 years ago by VBer ▴ 200
0
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0
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3.3k
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Comment: C: Problem in running NOISeq-sim
5.4 years ago by VBer ▴ 200
2
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0
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5.8k
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Comment: C: bcftools mpileup --max depth : What would be a reasonable setting for this optio
5.4 years ago by VBer ▴ 200
1
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0
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6.9k
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Comment: C: how is the output of bcftools stats calculated?
5.4 years ago by VBer ▴ 200
1
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0
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2.4k
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Comment: C: bcftools stats numbers do not match
5.4 years ago by VBer ▴ 200
1
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1
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2.4k
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bcftools stats numbers do not match
bcftools
5.4 years ago by VBer ▴ 200
1
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8
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6.8k
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Error using feature counts with DESeq2 : Cannot create DESeqData object
RNA-Seq DESeq2 featurecounts
updated 5.5 years ago by 20 • written 5.6 years ago by ▴ 200
0
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1
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5.8k
views
Comment: C: bcftools mpileup --max depth : What would be a reasonable setting for this optio
5.6 years ago by VBer ▴ 200
7
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4
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5.8k
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bcftools mpileup --max depth : What would be a reasonable setting for this option?
bcftools mpileup consensus
5.6 years ago by VBer ▴ 200
0
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0
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6.8k
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Comment: C: Error using feature counts with DESeq2 : Cannot create DESeqData object
5.6 years ago by VBer ▴ 200
0
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1
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6.8k
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Comment: C: Error using feature counts with DESeq2 : Cannot create DESeqData object
5.6 years ago by VBer ▴ 200
0
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1
reply
6.8k
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Comment: C: Error using feature counts with DESeq2 : Cannot create DESeqData object
5.6 years ago by VBer ▴ 200
0
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0
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4.0k
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Comment: C: BQSR vs VQSR
5.6 years ago by VBer ▴ 200
0
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0
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3.1k
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Comment: C: What is the importance of checking per base sequence content and per sequence GC
5.6 years ago by VBer ▴ 200
8
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2
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6.5k
views
Why do we need a .fai file and a .dict file of the reference during alignment and variant calling using GATK?
next-gen sequencing GATK alignment file_formats
updated 5.6 years ago by 164k • written 5.6 years ago by ▴ 200
3
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1
reply
2.4k
views
What is a Chimera with regards to NGS?
ngs next-gen sequencing
5.6 years ago by VBer ▴ 200
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