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Answer: Answer: Batch effect that is same as main factor
3.2 years ago by swbarnes2 14k
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2.5k
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Comment: Comment: Multiple columns in RNAseq count matrix?
3.2 years ago by swbarnes2 14k
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2.5k
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Answer: Answer: Multiple columns in RNAseq count matrix?
3.2 years ago by swbarnes2 14k
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2.6k
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Comment: Comment: Can exons from different reading frames coexist in a peptide sequence?
3.2 years ago by swbarnes2 14k
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2.6k
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Comment: Comment: Can exons from different reading frames coexist in a peptide sequence?
3.2 years ago by swbarnes2 14k
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8.7k
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Comment: Comment: BCL files conversion to FASTQ without SampleSheet.csv
3.2 years ago by swbarnes2 14k
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8.7k
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Comment: Comment: BCL files conversion to FASTQ without SampleSheet.csv
3.2 years ago by swbarnes2 14k
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2.6k
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Comment: Comment: Can exons from different reading frames coexist in a peptide sequence?
3.2 years ago by swbarnes2 14k
1
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1
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8.7k
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Comment: Comment: BCL files conversion to FASTQ without SampleSheet.csv
3.2 years ago by swbarnes2 14k
1
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1
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8.7k
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Comment: Comment: BCL files conversion to FASTQ without SampleSheet.csv
3.2 years ago by swbarnes2 14k
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1.5k
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Comment: Comment: Very high read count variation in WGS alignments
3.2 years ago by swbarnes2 14k
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2.6k
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Comment: Comment: Can exons from different reading frames coexist in a peptide sequence?
3.2 years ago by swbarnes2 14k
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1
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2.7k
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Comment: Comment: Using samtools to read a bam file
3.2 years ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Identify Mapped reads and Unmaped Mate pairs
3.2 years ago by swbarnes2 14k
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1
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2.7k
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Answer: Answer: Using samtools to read a bam file
3.2 years ago by swbarnes2 14k
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2
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1.7k
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Answer: Answer: Comparing two RNA-seq data sets mouse and human
3.2 years ago by swbarnes2 14k
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2.3k
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Comment: Comment: RNAseq count which strand to use
3.2 years ago by swbarnes2 14k
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2.2k
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Answer: Answer: Why is bcl2fastq2 taking so long to calculate stats?
3.2 years ago by swbarnes2 14k
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2
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2.3k
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Answer: Answer: RNAseq count which strand to use
3.2 years ago by swbarnes2 14k
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659
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Comment: Comment: Subsetting Common Differentially Expressed Genes in Multigrade Glioma
3.2 years ago by swbarnes2 14k
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1.4k
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Answer: Answer: Batch effects
3.2 years ago by swbarnes2 14k
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1.1k
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Answer: Answer: In what way should cellranger count be performed , when there are multiple runs
3.2 years ago by swbarnes2 14k
1
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1
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2.9k
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Comment: Comment: Splice aware vs splice unaware aligners?
3.2 years ago by swbarnes2 14k
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1
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2.6k
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Comment: Comment: How to perform DE anaysis on a data set in which biological replicates have high
3.2 years ago by swbarnes2 14k
4
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1
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4.1k
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Answer: Answer: edgeR design matrix error not of full rank
3.2 years ago by swbarnes2 14k
0
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1
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2.6k
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Comment: Comment: How to perform DE anaysis on a data set in which biological replicates have high
3.2 years ago by swbarnes2 14k
0
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1
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2.6k
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Answer: Answer: How to perform DE anaysis on a data set in which biological replicates have high
3.2 years ago by swbarnes2 14k
0
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1
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2.6k
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Comment: Comment: How to perform DE anaysis on a data set in which biological replicates have high
3.2 years ago by swbarnes2 14k
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0
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1.3k
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Answer: Answer: NGS raw data manipulation using Linux/Unix
3.2 years ago by swbarnes2 14k
0
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0
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1.2k
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Comment: Comment: How can I convert ensemble exon ID to gene symbol in a gene count dataframe?
3.2 years ago by swbarnes2 14k
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1
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1.3k
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Answer: Answer: DE analysis using technical replicates
3.2 years ago by swbarnes2 14k
0
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1
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1.7k
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Comment: Comment: How to execute one command on all files within a directory
3.2 years ago by swbarnes2 14k
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0
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2.1k
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Comment: Comment: Understanding the output of Negative Binomial in DESeq2
3.2 years ago by swbarnes2 14k
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0
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1.2k
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Comment: Comment: DESEQ2 / OUTRIDER Error
3.2 years ago by swbarnes2 14k
1
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1
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1.2k
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Answer: Answer: Use one few genes instead of reference genome in mapping
3.2 years ago by swbarnes2 14k
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1.4k
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Answer: Answer: not primary alignment flag filtering does not work
3.2 years ago by swbarnes2 14k
0
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1
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2.1k
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Comment: Comment: rsem-calculate-expression with STAR takes forever but without error
3.2 years ago by swbarnes2 14k
1
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0
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1.3k
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Answer: Answer: Highly mapped to introns
updated 3.2 years ago by 13k • written 3.2 years ago by 14k
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1
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2.3k
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Comment: Comment: Deseq2 - how to save zero counts on normalization step
3.2 years ago by swbarnes2 14k
1
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0
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2.8k
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Answer: Answer: Samtools - [main_samview] fail to read the header
updated 3.2 years ago by 44k • written 3.2 years ago by 14k
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0
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1.2k
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Comment: Comment: How do I determine p-value and fold change for TMM normalized data?
3.2 years ago by swbarnes2 14k
0
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1
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1.8k
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Answer: Answer: WES data analysis with UMI barcode
3.2 years ago by swbarnes2 14k
0
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0
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717
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Comment: Comment: Should I expect high duplicate read frequency in my scRNA fastq's?
3.2 years ago by swbarnes2 14k
0
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1
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1.4k
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Answer: Answer: Problem with BAM file headers
3.2 years ago by swbarnes2 14k
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0
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761
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Comment: Comment: Different Gene Lengths and Expected Gene Lengths from Sample to Sample
3.2 years ago by swbarnes2 14k
0
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0
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2.9k
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Comment: Comment: How to count gene expression level in R?
3.2 years ago by swbarnes2 14k
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0
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1.1k
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Answer: Answer: How to extract unique fastq seq. from BAM, irrespective of FLAG value ?
3.2 years ago by swbarnes2 14k
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0
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2.0k
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Answer: Answer: How to fasterq-dump 10x genomics snATACseq fastq from SRA
3.2 years ago by swbarnes2 14k
1
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1
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4.2k
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Comment: Comment: Output of samtools view, what does the third column actually represent?
3.2 years ago by swbarnes2 14k
1
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2
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4.2k
views
Answer: Answer: Output of samtools view, what does the third column actually represent?
3.2 years ago by swbarnes2 14k
2,066 results • Page 12 of 42
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