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0
votes
0
replies
4.0k
views
Comment:
C: how to visualize rna-seq coverage track in igv?
4.8 years ago by
Zee_S
▴ 60
0
votes
0
replies
4.0k
views
Comment:
C: how to visualize rna-seq coverage track in igv?
5.1 years ago by
Zee_S
▴ 60
2
votes
6
replies
4.0k
views
how to visualize rna-seq coverage track in igv?
igv
RNA-Seq
coverage
bam
normalization
updated 5.1 years ago by
jared.andrews07
★ 18k • written 5.1 years ago by
Zee_S
▴ 60
0
votes
1
reply
4.0k
views
Comment:
C: how to visualize rna-seq coverage track in igv?
5.1 years ago by
Zee_S
▴ 60
1
vote
1
reply
1.2k
views
STAR mapping statistics don't add up with samtools count
STAR
read count
samtools
PE
SE
updated 5.2 years ago by
lieven.sterck
15k • written 5.2 years ago by
Zee_S
▴ 60
0
votes
0
replies
919
views
what does the alignment statistics of your RNA spike-in tell you about your sample of interest in two experimental conditions?
Spike-in RNA-seq
STAR
normalization
5.2 years ago by
Zee_S
▴ 60
0
votes
0
replies
1.4k
views
Comment:
C: Is there a way to get multiBigwigSummary with 1-based coordinates instead of 0-b
5.2 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.4k
views
Comment:
C: Is there a way to get multiBigwigSummary with 1-based coordinates instead of 0-b
5.2 years ago by
Zee_S
▴ 60
2
votes
4
replies
1.4k
views
Is there a way to get multiBigwigSummary with 1-based coordinates instead of 0-based?
Deeptools
multiBigwigSummary
5.2 years ago by
Zee_S
▴ 60
0
votes
0
replies
4.6k
views
Comment:
C: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.3 years ago by
Zee_S
▴ 60
0
votes
1
reply
4.6k
views
Comment:
C: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.3 years ago by
Zee_S
▴ 60
6
votes
11
replies
4.6k
views
is 0-based start and 1-based end of bed format not compatible with htseq-count?
htseq-count
index-error
0-based start
bed to gtf
updated 5.3 years ago by
michael.ante
★ 3.9k • written 5.3 years ago by
Zee_S
▴ 60
0
votes
0
replies
4.6k
views
Comment:
C: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.3 years ago by
Zee_S
▴ 60
0
votes
1
reply
4.6k
views
Comment:
C: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.3 years ago by
Zee_S
▴ 60
1
vote
1
reply
1.2k
views
HT-seq-count default parameter to "score"secondary alignments contradicts its documentation that it ignores multi mappers by default. Not clear!
secondary alignment
multimapping read
HTSeq-count
5.3 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.8k
views
How to divide a chromosome into arms and center?
chromsome
arm
center
bed
coordinates
6.1 years ago by
Zee_S
▴ 60
0
votes
0
replies
2.6k
views
Comment:
C: How to add linear regression line and change the colors of my hexbin scatterplot
6.1 years ago by
Zee_S
▴ 60
0
votes
4
replies
2.6k
views
How to add linear regression line and change the colors of my hexbin scatterplot?
hexbin
scatterplot
linear regression
R
updated 6.1 years ago by
zx8754
12k • written 6.1 years ago by
Zee_S
▴ 60
0
votes
1
reply
2.6k
views
Comment:
C: How to add linear regression line and change the colors of my hexbin scatterplot
6.1 years ago by
Zee_S
▴ 60
0
votes
1
reply
5.5k
views
Comment:
A: How to add a regression line and change colors in ggplot smoothscatter?
updated 6.2 years ago by
Ram
44k • written 6.2 years ago by
Zee_S
▴ 60
1
vote
6
replies
5.5k
views
How to add a regression line and change colors in ggplot smoothscatter?
ggplot
smoothscatter
R
6.2 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.1k
views
Deeptools plotCorrelation function bug?
deeptools
plotCorrelation
6.2 years ago by
Zee_S
▴ 60
2
votes
2
replies
3.0k
views
How to correlate chip seq peaks?
chip seq
correlation
pearson
spearman
peaks
updated 6.4 years ago by
Rory Stark
★ 2.1k • written 6.5 years ago by
Zee_S
▴ 60
0
votes
0
replies
1.2k
views
how to correlate RNAseq dataset to chipset dataset?
rnaseq
chIPseq
correlation
6.6 years ago by
Zee_S
▴ 60
0
votes
0
replies
1.1k
views
how to produce a cluster plot of rna-seq + chipseq data?
rnaseq
chipseq
correlation
6.7 years ago by
Zee_S
▴ 60
0
votes
0
replies
2.7k
views
Comment:
C: How to do correlation analyses between RNAseq and ChIPseq library?
6.7 years ago by
Zee_S
▴ 60
0
votes
0
replies
2.9k
views
Comment:
C: Pearson correlation between chIP-seq replicates is very poor- am I doing somethi
6.7 years ago by
Zee_S
▴ 60
0
votes
0
replies
2.7k
views
Comment:
C: How to do correlation analyses between RNAseq and ChIPseq library?
6.7 years ago by
Zee_S
▴ 60
3
votes
4
replies
2.7k
views
How to do correlation analyses between RNAseq and ChIPseq library?
RNA-Seq
ChIP-Seq
correlation
normalization
updated 6.7 years ago by
Hussain Ather
▴ 990 • written 6.7 years ago by
Zee_S
▴ 60
0
votes
0
replies
906
views
Can one artificially increase read count per genomic bin for IP and Input libraries in order to prevent significant changes in log2ratio?
ChIP-Seq
normalization
6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.9k
views
How to classify chIP-seq reads into gene bins?
RNA-Seq
ChIP-Seq
gene
TPMScore
normalization
updated 6.7 years ago by
Devon Ryan
105k • written 6.7 years ago by
Zee_S
▴ 60
2
votes
5
replies
2.9k
views
Pearson correlation between chIP-seq replicates is very poor- am I doing something wrong in the normalization?!
correlation
ChIP-Seq
pearson
updated 6.7 years ago by
jomo018
▴ 730 • written 6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
2.9k
views
Comment:
C: Pearson correlation between chIP-seq replicates is very poor- am I doing somethi
6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.3k
views
Comment:
C: is it necessary to normalize between a Paired-End and Single-End library?
6.7 years ago by
Zee_S
▴ 60
1
vote
3
replies
1.3k
views
is it necessary to normalize between a Paired-End and Single-End library?
RNA-Seq
ChIP-Seq
normalization
6.7 years ago by
Zee_S
▴ 60
1
vote
1
reply
12k
views
Comment:
C: Chromosome Position From Ucsc Genome Browser
6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
4.4k
views
Comment:
C: How to annotate repeats?
6.7 years ago by
Zee_S
▴ 60
2
votes
12
replies
3.5k
views
6 follow
How to get the total genic and intergenic length of a chromosome?
genic
intergenic
length
updated 3.3 years ago by
t.montserrat.ayuso
▴ 40 • written 6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
3.5k
views
Comment:
C: How to get the total genic and intergenic length of a chromosome?
6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
3.5k
views
Comment:
C: How to get the total genic and intergenic length of a chromosome?
6.7 years ago by
Zee_S
▴ 60
0
votes
2
replies
3.5k
views
Comment:
C: How to get the total genic and intergenic length of a chromosome?
updated 6.7 years ago by
GenoMax
148k • written 6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
3.5k
views
Comment:
C: How to get the total genic and intergenic length of a chromosome?
6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.2k
views
how to get intergene coordinates for a single chromosome?
bedtools
intersect
intergene
coordinates
6.7 years ago by
Zee_S
▴ 60
8
votes
4
replies
4.4k
views
How to annotate repeats?
repeats
annotation
SINE
LINE
normalization
updated 6.7 years ago by
Beuss
▴ 140 • written 6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.2k
views
Comment:
C: Calculate the total genie length targeted in my chIP
6.7 years ago by
Zee_S
▴ 60
0
votes
2
replies
1.8k
views
How to compute log2ratio of IP/Input when Input has zero reads?
normalization
log2ratio
bedtools
coveragebed
Input
6.7 years ago by
Zee_S
▴ 60
3
votes
5
replies
1.2k
views
Calculate the total genie length targeted in my chIP
ChIP-Seq
Genic_length
enrichment
BEDtools
updated 6.7 years ago by
zx8754
12k • written 6.7 years ago by
Zee_S
▴ 60
0
votes
1
reply
1.2k
views
Comment:
C: how to calculate the total genie length targeted in my chIP?
6.7 years ago by
Zee_S
▴ 60
0
votes
0
replies
1.5k
views
Where, When and How to use the "breadth of coverage" values reported per bin in BEDtools coverageBED?
bedtools
bedtools_coverageBED
bedtools_windowMaker
6.7 years ago by
Zee_S
▴ 60
1
vote
1
reply
2.2k
views
How to calculate the correlation between two ChIP-seq INPUT datasets?
ChIP-Seq
sequencing
normalization
correlation
6.7 years ago by
Zee_S
▴ 60
53 results • Page
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